Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq67 172 1e-37 seq31 138 3e-27 seq119 93.3 1e-13 seq25 93.3 1e-13 >seq67 Length=206978 Score = 172 bits (190), Expect = 1e-37 Identities = 154/193 (80%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||| || |||| ||| || | |||||||||| |||||||| || ||||| Sbjct 177982 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 178041 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || ||||| || || ||||||| |||||||||||||||||||||||| || ||||| || Sbjct 178042 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCA 178101 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| |||| || ||| || || || ||||| ||||| ||||| ||||| || || || Sbjct 178102 ATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGAAG 178161 Query 211107 ACCTGCATTTTAT 211119 | |||||| |||| Sbjct 178162 ATCTGCATCTTAT 178174 >seq31 Length=344941 Score = 138 bits (152), Expect = 3e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || || | ||| || || ||||| |||||||||||||| || | ||| || | ||||| Sbjct 305283 AGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAA-CGTGCGACCATC 305341 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||| |||||| || ||||| || | || ||||| || ||||||| |||||||| || Sbjct 305342 TTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATC 305401 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||| ||||| ||||| || || || | ||| ||| || || || | ||| ||||| Sbjct 305402 TTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGT 305461 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| ||||| | |||||| Sbjct 305462 TTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 305494 Score = 138 bits (152), Expect = 3e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || || | ||| || || ||||| |||||||||||||| || | ||| || | ||||| Sbjct 324044 AGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAA-CGTGCGACCATC 323986 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||| |||||| || ||||| || | || ||||| || ||||||| |||||||| || Sbjct 323985 TTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATC 323926 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||| ||||| ||||| || || || | ||| ||| || || || | ||| ||||| Sbjct 323925 TTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGT 323866 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| ||||| | |||||| Sbjct 323865 TTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 323833 Score = 136 bits (150), Expect = 9e-27 Identities = 165/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGT 210952 ||||| | || || | ||| | || || || ||||| || || ||||| | ||| | | Sbjct 305046 CGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAG-T 305104 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || |||||||||||||| || || || || || |||||||| || ||||||| || Sbjct 305105 ACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACC 305164 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || |||||||| || || | ||| || ||| || || | Sbjct 305165 TTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAA 305224 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || || | ||||| || || | |||||| Sbjct 305225 AGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 305266 Score = 136 bits (150), Expect = 9e-27 Identities = 165/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGT 210952 ||||| | || || | ||| | || || || ||||| || || ||||| | ||| | | Sbjct 324281 CGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAG-T 324223 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || |||||||||||||| || || || || || |||||||| || ||||||| || Sbjct 324222 ACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACC 324163 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || |||||||| || || | ||| || ||| || || | Sbjct 324162 TTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAA 324103 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || || | ||||| || || | |||||| Sbjct 324102 AGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 324061 Score = 131 bits (144), Expect = 4e-25 Identities = 164/221 (74%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 || || || || || || ||||| || | ||| | | | || |||||||||||||| || Sbjct 305754 GTCGATTCCTTCTGAATATTATAGTCGCTCAAAG-TACGACCGTCTTCCAGCTGCTTTCC 305812 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || || || | || ||||| |||||||||| |||||||| ||||| ||||| || || Sbjct 305813 AGCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTT 305872 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 |||||| ||||| | ||| || ||| || || | ||||| ||||| || ||||| || Sbjct 305873 CACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGT 305932 Query 211097 CTTTACAAACACCTGCATTTTATGGTTACTTGATGCTTCTT 211137 ||| || || | ||||||| | | ||| ||| | |||||| Sbjct 305933 CTTCACGAAAATCTGCATTGTCTTCTTA-TTGCTTCTTCTT 305972 Score = 131 bits (144), Expect = 4e-25 Identities = 164/221 (74%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 || || || || || || ||||| || | ||| | | | || |||||||||||||| || Sbjct 323573 GTCGATTCCTTCTGAATATTATAGTCGCTCAAAG-TACGACCGTCTTCCAGCTGCTTTCC 323515 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || || || | || ||||| |||||||||| |||||||| ||||| ||||| || || Sbjct 323514 AGCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTT 323455 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 |||||| ||||| | ||| || ||| || || | ||||| ||||| || ||||| || Sbjct 323454 CACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGT 323395 Query 211097 CTTTACAAACACCTGCATTTTATGGTTACTTGATGCTTCTT 211137 ||| || || | ||||||| | | ||| ||| | |||||| Sbjct 323394 CTTCACGAAAATCTGCATTGTCTTCTTA-TTGCTTCTTCTT 323355 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 || ||||| || || ||||| || || | ||| | | | ||||| || |||||||| || Sbjct 305526 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACG-TGCGACCATCCTCAAGCTGCTTTCC 305584 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || ||||| || ||||| || || ||||| | ||||||||||| || ||||||||||| Sbjct 305585 AGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTT 305644 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || || ||||| | ||| || ||| || || | ||||| ||||| ||||| | || Sbjct 305645 GACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATAGTCTTCCCCGTTAATGT 305704 Query 211097 CTTTACAAACACCTGCAT 211114 ||| ||||| | |||||| Sbjct 305705 CTTCACAAAGATCTGCAT 305722 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 || ||||| || || ||||| || || | ||| | | | ||||| || |||||||| || Sbjct 323801 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACG-TGCGACCATCCTCAAGCTGCTTTCC 323743 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || ||||| || ||||| || || ||||| | ||||||||||| || ||||||||||| Sbjct 323742 AGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTT 323683 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || || ||||| | ||| || ||| || || | ||||| ||||| ||||| | || Sbjct 323682 GACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATAGTCTTCCCCGTTAATGT 323623 Query 211097 CTTTACAAACACCTGCAT 211114 ||| ||||| | |||||| Sbjct 323622 CTTCACAAAGATCTGCAT 323605 >seq119 Length=50977 Score = 93.3 bits (102), Expect = 1e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| ||||||||||| || ||||| | || || || || || |||| ||||||| Sbjct 37827 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCC 37768 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||| || || || || ||||| || || | ||| || || || ||||| ||| Sbjct 37767 TTGTCCTGAATTTTCTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCGACGTCGAGCGTG 37708 Query 211077 ATCGTCTTTCC 211087 || || || || Sbjct 37707 ATGGTTTTACC 37697 >seq25 Length=441456 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 || ||||||||||||||||||||||| || || || || ||| |||| || || || Sbjct 69460 ACACCTTCCTTGTCCTGGATCTTTTGCTTGACATTGTCAATGCTGTCCGATGGCTCCACA 69519 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGTT 211123 || | ||||| ||||| |||||||| || || ||||| | ||||||||| || || Sbjct 69520 TCCAATGTGATGGTCTTGCCCGTGAGGGTTTTCACAAAAATCTGCATTTTCTGTTT 69575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159147395993150