Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq31 156 1e-32 seq67 145 2e-29 seq25 89.7 1e-12 seq119 84.2 5e-11 >seq31 Length=344941 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||| | || ||||| ||||| | ||||||||| |||||| Sbjct 305046 CGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTA 305105 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| |||||||| || || || || || |||||||| || || ||||||||| Sbjct 305106 CGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCT 305165 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||||| || || | ||| || | |||||| || || Sbjct 305166 TCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAA 305225 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| ||||| || || | ||| | ||||| Sbjct 305226 GTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 305266 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||| | || ||||| ||||| | ||||||||| |||||| Sbjct 324281 CGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTA 324222 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| |||||||| || || || || || |||||||| || || ||||||||| Sbjct 324221 CGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCT 324162 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||||| || || | ||| || | |||||| || || Sbjct 324161 TCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAA 324102 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| ||||| || || | ||| | ||||| Sbjct 324101 GTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 324061 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| || || || ||||||| || || ||| ||| || | |||||| Sbjct 305283 AGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCT 305342 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| |||||||| || | || ||||| || || |||||||||||||| ||| Sbjct 305343 TCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCT 305402 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| |||||||||||| || || | ||| |||| ||||| || || || ||||| Sbjct 305403 TGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTT 305462 Query 225682 TTGCCCGTCAAAGTTTT 225698 || |||||||| || || Sbjct 305463 TTCCCCGTCAACGTCTT 305479 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| || || || ||||||| || || ||| ||| || | |||||| Sbjct 324044 AGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCT 323985 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| |||||||| || | || ||||| || || |||||||||||||| ||| Sbjct 323984 TCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCT 323925 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| |||||||||||| || || | ||| |||| ||||| || || || ||||| Sbjct 323924 TGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTT 323865 Query 225682 TTGCCCGTCAAAGTTTT 225698 || |||||||| || || Sbjct 323864 TTCCCCGTCAACGTCTT 323848 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| || || | ||| || ||| |||||| | || ||||| |||||||| ||| Sbjct 305754 GTCGATTCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTCCAGCTGCTTTCCA 305813 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || || | || ||||| || || |||||||||||||| || || ||||| |||||| Sbjct 305814 GCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTTC 305873 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||||| | ||| || | ||| ||||| |||||||| |||||||| || | || Sbjct 305874 ACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGTC 305933 Query 225697 TTTATGAACACTTGCATT 225714 || | ||| | |||||| Sbjct 305934 TTCACGAAAATCTGCATT 305951 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| || || | ||| || ||| |||||| | || ||||| |||||||| ||| Sbjct 323573 GTCGATTCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTCCAGCTGCTTTCCA 323514 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || || | || ||||| || || |||||||||||||| || || ||||| |||||| Sbjct 323513 GCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTTC 323454 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||||| | ||| || | ||| ||||| |||||||| |||||||| || | || Sbjct 323453 ACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGTC 323394 Query 225697 TTTATGAACACTTGCATT 225714 || | ||| | |||||| Sbjct 323393 TTCACGAAAATCTGCATT 323376 Score = 125 bits (138), Expect = 2e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || || | ||||| ||| ||| || | ||||| || |||||||| ||| Sbjct 305526 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGCTTTCCA 305585 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| || ||||| || || || || || |||||||||||||| |||||||| || Sbjct 305586 GCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTTG 305645 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||||| | ||| || | ||| ||||| || ||||| ||||| ||||| || || Sbjct 305646 ACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATAGTCTTCCCCGTTAATGTC 305705 Query 225697 TT 225698 || Sbjct 305706 TT 305707 Score = 125 bits (138), Expect = 2e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || || | ||||| ||| ||| || | ||||| || |||||||| ||| Sbjct 323801 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGCTTTCCA 323742 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| || ||||| || || || || || |||||||||||||| |||||||| || Sbjct 323741 GCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTTG 323682 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||||| | ||| || | ||| ||||| || ||||| ||||| ||||| || || Sbjct 323681 ACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATAGTCTTCCCCGTTAATGTC 323622 Query 225697 TT 225698 || Sbjct 323621 TT 323620 >seq67 Length=206978 Score = 145 bits (160), Expect = 2e-29 Identities = 148/193 (77%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||||| || | | || | |||||||| | ||||| ||||| ||||| Sbjct 177982 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 178041 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || ||||| || || || ||||| ||||||||||| |||||||||||||| || || Sbjct 178042 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCA 178101 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 ||| |||| || | ||||||||| | |||||| ||||||||||| | |||||| | ||| Sbjct 178102 ATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGAAG 178161 Query 225706 ACTTGCATTTTAT 225718 | ||||| |||| Sbjct 178162 ATCTGCATCTTAT 178174 >seq25 Length=441456 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 225609 ACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 |||||||||||| |||||||||||||| ||| || ||| |||| || | ||||| || Sbjct 69462 ACCTTCCTTGTCCTGGATCTTTTGCTTGACATTGTCAATGCTGTCCGATGGCTCCACATC 69521 Query 225669 TAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGGTT 225722 || ||||| ||||||||||| | ||||| | || | |||||||| || || Sbjct 69522 CAATGTGATGGTCTTGCCCGTGAGGGTTTTCACAAAAATCTGCATTTTCTGTTT 69575 >seq119 Length=50977 Score = 84.2 bits (92), Expect = 5e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| |||||||| ||||| ||||| | || || || || || ||||| |||||| Sbjct 37827 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCC 37768 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || || || ||||| || || || | ||| || | || ||||| | |||| Sbjct 37767 TTGTCCTGAATTTTCTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCGACGTCGAGCGTG 37708 Query 225676 ATCGTCTTGCC 225686 || || || || Sbjct 37707 ATGGTTTTACC 37697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192526463415140