Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq17 127 2e-24 >seq17 Length=533465 Score = 127 bits (140), Expect = 2e-24 Identities = 391/603 (65%), Gaps = 20/603 (3%) Strand=Plus/Plus Query 29639 TGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACA 29698 || ||| | ||||| ||||||||||| | ||||| || || || || | | ||||| Sbjct 296625 TGGATCTTGAGCGGCTCCACGTGGTCCAAGTAGATATGTGCGTCACCAATGACGTGGATG 296684 Query 29699 AACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTG 29758 || || || | | || || ||||| || || |||| ||||| | | ||||||| Sbjct 296685 AAATCACCAGCCTTCAGTCCCGTGACCTGTGCGATCAACCGTGTGAGCAAGGCGTAGCTG 296744 Query 29759 GCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAG 29818 ||||| || || || || || ||||||||||| | || | |||||| | |||||| Sbjct 296745 GCGATATTGAATGGGACGCCCAGCCCCATGTCTGCCGAGCGCTGGTACATCTGGCAGCTA 296804 Query 29819 AGCTCTCCGTCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATG 29875 || || || | || || || |||| ||||| ||||| ||||| || ||||| Sbjct 296805 AGTTCACCATTAGCGACATAGAATTGACAAAACATG---TGGCATGGAGGGAGTGCCATC 296861 Query 29876 AGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTC-TTCTGGGTTGTT 29934 ||| || || |||||||| ||| ||||||||| | ||| ||| | ||||| Sbjct 296862 TCCTTCAAATCCGCTGGATTCCAGGCTGACATGATGATGCGACGGTCGTTCGGATTTGTT 296921 Query 29935 CCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTG 29990 ||| || | |||| || || |||||||| || ||| || | ||| || | Sbjct 296922 -TTGAGCTTGTGAATCACGTCG----GCGAGCTGATCGACACCCTGGCCAGTGTAATCGG 296976 Query 29991 NNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCA 30050 ||||||| | |||||| ||||| || || ||||| | Sbjct 296977 CGTGCATATTGGTGTACTTGGCGCCGAAATGTCGCCACTGAAACCCATATACGGGTCCAA 297036 Query 30051 GGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30110 |||| || ||| | || |||| || | ||||||| | ||||| || || ||| Sbjct 297037 GGTCACCAGTTTCACGGTTTTCGAGTCCAATGCTGTCCAAGTATTCTCTCGAGCCATTGC 297096 Query 30111 CGTCCCAGATCTTTACCCCCTTCTC--GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGAC 30168 |||||||||| | ||| || |||| | || |||| || ||| || |||| Sbjct 297097 CGTCCCAGATACGAATGTTCTTGTCCTGGAGTG-TC-TTGGCATTCGTGTCGCCACTGAT 297154 Query 30169 GAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228 ||||||||| | ||| || | || | |||||| || | ||| ||||| | ||| || Sbjct 297155 GAACCACAGTAACTCTTCTGCAACTCCACGCCAAAACACTCGCTTCGTCGTTAAGAGCGG 297214 Query 30229 AAA 30231 ||| Sbjct 297215 AAA 297217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406161665464660