Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq17 178 1e-39 >seq17 Length=533465 Score = 178 bits (196), Expect = 1e-39 Identities = 402/596 (67%), Gaps = 14/596 (2%) Strand=Plus/Plus Query 27137 TCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACT 27196 |||| ||||| |||||||| |||| ||||| || ||||| || | | ||||| || | Sbjct 296629 TCTTGAGCGGCTCCACGTGGTCCAAGTAGATATGTGCGTCACCAATGACGTGGATGAAAT 296688 Query 27197 CTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGA 27256 | || | | || || ||||| || || |||| ||||| | | ||||||||||| Sbjct 296689 CACCAGCCTTCAGTCCCGTGACCTGTGCGATCAACCGTGTGAGCAAGGCGTAGCTGGCGA 296748 Query 27257 TGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 27316 | || || || || || ||||||||||| |||| | |||||| | ||| || || | Sbjct 296749 TATTGAATGGGACGCCCAGCCCCATGTCTGCCGAGCGCTGGTACATCTGGCAGCTAAGTT 296808 Query 27317 CTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCA 27376 | |||| || || || ||||| | |||||| ||||| || ||||| || Sbjct 296809 CACCATTAGCGACATAGAATTGACAAAACATGTGGCATGGAGGGAGTGCCATCTCCTTCA 296868 Query 27377 AGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTGTTCCTGA-- 27433 | || || |||||||| ||| ||||||||| | ||| ||| | ||||| ||| Sbjct 296869 AATCCGCTGGATTCCAGGCTGACATGATGATGCGACGGTCGTTCGGATTTGTT-TTGAGC 296927 Query 27434 -TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCAT 27491 || | |||| || || |||||||| || ||| || | ||| || | ||| Sbjct 296928 TTGTGAATCACGTCG----GCGAGCTGATCGACACCCTGGCCAGTGTAATCGGCGTGCAT 296983 Query 27492 GTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCC 27551 | ||||||| || |||||||| | ||| || ||||| || || ||||| ||||| || Sbjct 296984 ATTGGTGTACTTGGCGCCGAAATGTCGCCACTGAAACCCATATACGGGTCCAAGGTCACC 297043 Query 27552 CTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 27611 ||| | || |||| || | ||||||| | ||||| || || ||| ||||||| Sbjct 297044 AGTTTCACGGTTTTCGAGTCCAATGCTGTCCAAGTATTCTCTCGAGCCATTGCCGTCCCA 297103 Query 27612 GATCTTTACCCCCTTCTC--GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCAC 27669 ||| | ||| || |||| | || |||| || ||| || |||| ||||||| Sbjct 297104 GATACGAATGTTCTTGTCCTGGAGTG-TC-TTGGCATTCGTGTCGCCACTGATGAACCAC 297161 Query 27670 AGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 || | ||| || | || | |||||| || | ||| ||||| | ||| ||||| Sbjct 297162 AGTAACTCTTCTGCAACTCCACGCCAAAACACTCGCTTCGTCGTTAAGAGCGGAAA 297217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369505803955610