Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 172 8e-38 >seq1 Length=1523961 Score = 172 bits (190), Expect = 8e-38 Identities = 409/609 (67%), Gaps = 13/609 (2%) Strand=Plus/Minus Query 48133 ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAA 48192 |||| || || ||||| ||||| || | |||||||| | ||| || | ||| || || | Sbjct 465358 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 465299 Query 48193 ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 | ||||||| ||||| || ||||| || || | ||| || || | ||| || || | Sbjct 465298 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCG 465239 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGT 48312 ||||||| || || || || ||||||||||| || | || | || || || Sbjct 465238 AAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGC 465179 Query 48313 TGTGTATC-CACCGTTG---TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT 48368 | | || |||| | ||||||| |||||||| | || || || || ||||| Sbjct 465178 -GCGAGTCGCACCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCG 465120 Query 48369 ATAGCAT-TA--AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAA 48425 |||||| || ||| | || || || | ||||| | ||| || || || ||| Sbjct 465119 ATAGCACGTAGCAAGTG---GTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAA 465063 Query 48426 AGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTC 48485 || |||| |||||||||||| |||||||| || ||||| ||||||||||| || | | Sbjct 465062 AGCGAGTACACTTCGGAGTGAATGTTTTCAATGGCAATCTGGAATCCGTAAAAGCAGCGC 465003 Query 48486 GCTTCTGTGATCTGTACCTCCGTAC-AAAATCGTTCAGCCAAATTCTCATTTACTATTCC 48544 || || | | || || || ||| |||| || || | || || || || || || Sbjct 465002 GCCTCAGGCACTTGCACTTCACTACTGAAATTCATC-GCAAGGTTTTCGTTCACAATCCC 464944 Query 48545 ATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAG 48604 ||| || |||||||| || || || || || || || || | ||||||| |||| Sbjct 464943 ATCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCAT 464884 Query 48605 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGC 48664 || |||||| || | || | | ||| | ||||||||| |||||||| || Sbjct 464883 CTTGACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGC 464824 Query 48665 CTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724 || || || || ||||| ||| | || | |||||||||||| | ||||||| Sbjct 464823 TTCGGCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCG 464764 Query 48725 ATTTGGATT 48733 |||||| || Sbjct 464763 ATTTGGGTT 464755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666108158400