Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 161 1e-34 >seq1 Length=1523961 Score = 161 bits (178), Expect = 1e-34 Identities = 408/611 (67%), Gaps = 17/611 (3%) Strand=Plus/Minus Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681 |||| || || ||||| ||||| || | |||||||| | ||| || | ||| || || | Sbjct 465358 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 465299 Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 | |||| |||||||| || |||||||| || | ||| || || | ||| || || | Sbjct 465298 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCG 465239 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT 46801 ||||||| || || || |||||||| ||||| | || | || | || |||| || Sbjct 465238 AAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATA---GGCAGCAG 465182 Query 46802 TATG--AATC-CACCT-TTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTT 46855 | | || |||| || | |||||| ||||| || | || || || || |||| Sbjct 465181 CGCGCGAGTCGCACCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTT 465122 Query 46856 CTATAGCATTAAAGAGAAAGtttttttCATCACTA---TCTTTAACATATGTATCTATTA 46912 | |||||| | | |||| | | || | ||||| | ||||| || || | Sbjct 465121 CGATAGCACGTA---GCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCA 465065 Query 46913 AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATC 46972 |||| |||| ||| || |||||||||||||| || ||||| ||||||||||| || | Sbjct 465064 AAAGCGAGTACACTTCGGAGTGAATGTTTTCAATGGCAATCTGGAATCCGTAAAAGCAGC 465005 Query 46973 TTGCTTCAGTAATCTGTACCTCTGTAC-AAAATCGTTCAGACAAATTCTCATTCACTATT 47031 || |||| | || || || ||| |||| || | | || || ||||| || Sbjct 465004 GCGCCTCAGGCACTTGCACTTCACTACTGAAATTCATC-GCAAGGTTTTCGTTCACAATC 464946 Query 47032 CCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC 47091 ||||| || |||||||| || ||||| || || || || || | ||| | | ||| Sbjct 464945 CCATCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTC 464886 Query 47092 AGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGAC 47151 | || |||||| || | || | | ||| | ||||||||| ||||| || | Sbjct 464885 ATCTTGACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTC 464826 Query 47152 GCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAAT 47211 || || || || || ||||| ||| | || | | |||||| || || | |||||| Sbjct 464825 GCTTCGGCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAAT 464766 Query 47212 CTATTTGGATT 47222 | |||||| || Sbjct 464765 CGATTTGGGTT 464755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931637379200