Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq67 165 2e-35 seq31 149 1e-30 seq46 109 1e-18 seq18 109 1e-18 seq25 96.9 7e-15 seq119 95.1 3e-14 >seq67 Length=206978 Score = 165 bits (182), Expect = 2e-35 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||||||||||||||| | ||||||||||||||| || | ||| || || ||||||||| Sbjct 177982 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 178041 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | |||||| || || ||||| || |||||||| ||||||||| || ||| | || Sbjct 178042 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCA 178101 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || ||||||||| ||| || || || ||||| ||||| ||||| | ||| || ||||| Sbjct 178102 ATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGAAG 178161 Query 283092 ATCTGCATTTT 283102 |||||||| || Sbjct 178162 ATCTGCATCTT 178172 >seq31 Length=344941 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || | ||||| || || || || || || ||||||||||| Sbjct 305496 CCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTC 305555 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | |||||| |||||||| || || || || |||||||| | |||||| || || || Sbjct 305556 AACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGG 305615 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| |||||| ||| || ||||||| | ||| || | |||||| Sbjct 305616 ATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACG 305675 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| ||||| || ||||| || || |||||||| Sbjct 305676 TCCAATGTGATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 305722 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || | ||||| || || || || || || ||||||||||| Sbjct 323831 CCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTC 323772 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | |||||| |||||||| || || || || |||||||| | |||||| || || || Sbjct 323771 AACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGG 323712 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| |||||| ||| || ||||||| | ||| || | |||||| Sbjct 323711 ATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACG 323652 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| ||||| || ||||| || || |||||||| Sbjct 323651 TCCAATGTGATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 323605 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| |||| || | ||| || ||||||||||| ||||| Sbjct 305267 ACCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCT 305326 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||| ||||| || | || || || || || |||||||| ||||| || || Sbjct 305327 CAACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGG 305386 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| |||||||| ||| || || | || |||| |||||| | || || Sbjct 305387 AATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCAC 305446 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||| ||||| || |||||||| ||||| || || |||||||| Sbjct 305447 ATCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 305494 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| |||| || | ||| || ||||||||||| ||||| Sbjct 324060 ACCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCT 324001 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||| ||||| || | || || || || || |||||||| ||||| || || Sbjct 324000 CAACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGG 323941 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| |||||||| ||| || || | || |||| |||||| | || || Sbjct 323940 AATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCAC 323881 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||| ||||| || |||||||| ||||| || || |||||||| Sbjct 323880 ATCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 323833 >seq46 Length=277093 Score = 109 bits (120), Expect = 1e-18 Identities = 260/393 (66%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 273584 AATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGA 273643 ||||||||||| ||||||||| | |||| | | |||||||| || ||||| || Sbjct 162761 AATAATATCTTGCGGGTTGTAATTAGGAATGGAGCTTGACCAACCTGTTCCAATCCCTTC 162820 Query 273644 AGAACCATTCACCAGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATC 273703 |||||| || || || ||||||| ||||| || ||||| || |||||||| | Sbjct 162821 AGAACCGTTAACAAGCGCCATCGGGATGATTGGTACGTAATACTCTGGCTCAATGGACTG 162880 Query 273704 ACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGT 273763 ||||| || | | || |||| | | ||| ||| | | | |||| || || ||| Sbjct 162881 GCCATCATCATCCAAATAAGTCAAGACATCATTATCAAGAGGATCAAAAATCTGTCTCGT 162940 Query 273764 CTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAG 273823 | | | |||||| ||||| ||||| | | ||| ||| ||| || ||||| || Sbjct 162941 CAACTGCTCCAGTTTTGTGAAGATGTAACGAGGACTTGCAGCGTCTTTTCCACCCATCAA 163000 Query 273824 CCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATC 273883 || | ||| || || || | || || | || |||||||| ||||| |||| Sbjct 163001 TCTGGTACCGAATTGGCCGTTTGGAGAGAGAAGATGAATATTGTTGCTGCCGACAAAATC 163060 Query 273884 CTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTG 273943 || ||||| || | || ||||| | | | | ||| ||||| ||||| || ||| Sbjct 163061 TTGCGCCATGTTGATAATTGTCCCGTTCAAGCTTTGCTCACCGTGATGATAAGCAGAGTG 163120 Query 273944 TTCGGCGATATAACCACTGAACTGAGCAACCTT 273976 ||| | | || ||| || ||||| ||||| Sbjct 163121 TTCCGACACGTAGCCAGCCAATTGAGCTACCTT 163153 >seq18 Length=519368 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 316154 CAAGTGATTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCA 316213 |||| |||| ||||||||||| || ||||||| |||||||||||||| | || | Sbjct 346995 CAAGCAATTCCTTGTCTTCACCAGACTGGAAACGCCACTGGATGTACTGATTAGCAGTGA 346936 Query 316214 TGTCAAGATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATAT 316273 | || | || || || ||||| ||||| |||||||| |||||||| |||| |||||| Sbjct 346935 TATCCAAGTGCTCTTCAATGTGATGGAAGGCGTGCTGCGCCACGTACGCAAAACGCATGG 346876 Query 316274 TTGGATGCTTCCAAACGCTACCG 316296 || |||||||| ||| ||||| Sbjct 346875 CAGGGTGCTTCCACACGGTACCG 346853 >seq25 Length=441456 Score = 96.9 bits (106), Expect = 7e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || | |||| || | |||||| || || |||||||||||||| | Sbjct 69253 ACCACCACGCAGACGCAACACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 69312 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| || || | ||| || || |||||||||| ||| || || ||| || Sbjct 69313 CAGCGTGCGGCCGTCTTCCAATTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGAGG 69372 Query 282992 AATACC 282997 ||| || Sbjct 69373 AATTCC 69378 >seq119 Length=50977 Score = 95.1 bits (104), Expect = 3e-14 Identities = 106/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 282935 CGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAAT 282994 |||||| ||||| || || || || || |||||||||||||| || || || ||||| Sbjct 37834 CGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAAT 37775 Query 282995 ACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 || |||||||| || || || ||| || ||| | || || | |||||||| ||||| | Sbjct 37774 TCCTTCCTTGTCCTGAATTTTCTGC-TTGACGTTGTCAATCGAGTCCGAAGGCTCGACGT 37716 Query 283054 CGAGAGTGATCGTCTTACC 283072 |||| ||||| || ||||| Sbjct 37715 CGAGCGTGATGGTTTTACC 37697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046735042482740