Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1 109 6e-19 >seq1 Length=1523961 Score = 109 bits (120), Expect = 6e-19 Identities = 296/443 (67%), Gaps = 15/443 (3%) Strand=Plus/Minus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 || || ||||| ||||| || | |||||||| | ||| || | |||||| || || | Sbjct 465353 AAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTG 465294 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCA-AATGATCCGGAAAA 23624 | || ||||| | || || || || | ||| || || | |||| || || || ||||| Sbjct 465293 AGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGG-AGCAGAAGGAACCCGAAAA 465235 Query 23625 GAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTAT---A 23681 ||| || ||||| ||||||||||| |||| || ||| | || | | ||| | Sbjct 465234 GAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGCGCGA 465175 Query 23682 ATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAAT 23741 || | ||| || || |||| | |||||| | || || || ||||| || Sbjct 465174 GTCGCA---CCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCGAT 465118 Query 23742 TGCTTTTAAGAGAAAAGTTTTTTCTTCATTA--TCTGTTATATATGTATCAATTAGTAAA 23799 || || | | | | |||| | ||| | || ||||| ||||| | || Sbjct 465117 AGCACGTAGCA--AGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAA-AAG 465061 Query 23800 CTA-TACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGC 23858 | | |||| ||| || ||||| |||||||| |||||||| || || ||||| || | || Sbjct 465060 CGAGTACACTTCGGAGTGAATGTTTTCAATGGCAATCTGGAATCCGTAAAAGCAGCGCGC 465001 Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918 |||| || ||| || ||| || || | | || | |||||||| ||||| ||||| Sbjct 465000 CTCAGGCACTTGCACTTCACTACTGAAATTCATCGCAAGGTTTTCGTTCACAATCCCATC 464941 Query 23919 ACTAGCAGCAAAGAAAG-CAAGA 23940 || ||||||||||| | ||||| Sbjct 464940 GCTGGCAGCAAAGAACGCCAAGA 464918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521485979234000