Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq31 123 6e-23 seq119 100 7e-16 >seq31 Length=344941 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || || || ||||| | || || ||| || ||| Sbjct 305719 CAGATCTTTGTGAAGACATTAACGGGGAAGACTATCACATTGGACGTCGAACCGTCCGAC 305660 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || ||||||||||||||||| ||||| ||||| |||||||| || |||||| Sbjct 305659 TCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAGCAA 305600 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| ||||| || ||||| | || | ||| || ||| | Sbjct 305599 CGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAACATT 305540 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || ||| |||| |||| Sbjct 305539 CAGAAGGAGTCGACATTGCA-CTTG 305516 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || || || ||||| | || || ||| || ||| Sbjct 323608 CAGATCTTTGTGAAGACATTAACGGGGAAGACTATCACATTGGACGTCGAACCGTCCGAC 323667 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || ||||||||||||||||| ||||| ||||| |||||||| || |||||| Sbjct 323668 TCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAGCAA 323727 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| ||||| || ||||| | || | ||| || ||| | Sbjct 323728 CGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAACATT 323787 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || ||| |||| |||| Sbjct 323788 CAGAAGGAGTCGACATTGCA-CTTG 323811 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| || || || ||||| | || || ||| || ||| Sbjct 305947 CAGATTTTCGTGAAGACACTCACCGGCAAGACCATCACGTTGGACGTCGAACCGTCCGAC 305888 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || ||||||||||| || ||||| || ||||| || || || Sbjct 305887 TCGATCGACAACGTGAAGCAGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAACAG 305828 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| ||||| ||||| || | ||| | ||| ||||| | Sbjct 305827 CGTTTGATTTTTGCTGGAAAGCAGCTGGAAGACGGTCGTACTTTGAGCGACTATAATATT 305768 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| ||| |||| |||| Sbjct 305767 CAGAAGGAATCGACATTGCA-CTTG 305744 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| || || || ||||| | || || ||| || ||| Sbjct 323380 CAGATTTTCGTGAAGACACTCACCGGCAAGACCATCACGTTGGACGTCGAACCGTCCGAC 323439 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || ||||||||||| || ||||| || ||||| || || || Sbjct 323440 TCGATCGACAACGTGAAGCAGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAACAG 323499 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| ||||| ||||| || | ||| | ||| ||||| | Sbjct 323500 CGTTTGATTTTTGCTGGAAAGCAGCTGGAAGACGGTCGTACTTTGAGCGACTATAATATT 323559 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| ||| |||| |||| Sbjct 323560 CAGAAGGAATCGACATTGCA-CTTG 323583 >seq119 Length=50977 Score = 100 bits (110), Expect = 7e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||| ||||| ||||| ||||| || || || ||| | || || |||||||| || | Sbjct 37695 CAGGTAAAACCATCACGCTCGACGTCGAGCCTTCGGACTCGATTGACAACGTCAAGCAGA 37754 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 | ||||||||||| |||||||| || || || ||||| || | ||||| || || || | Sbjct 37755 AAATTCAGGACAAGGAAGGAATTCCCCCAGATCAGCAGCGTTTGATCTTTGCTGGCAAGC 37814 Query 178066 AGCTCGAAGATGG 178078 |||| |||||||| Sbjct 37815 AGCTTGAAGATGG 37827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726418930140