Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2 141 1e-28 >seq2 Length=1145976 Score = 141 bits (156), Expect = 1e-28 Identities = 371/558 (66%), Gaps = 10/558 (2%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||||| || || || || || || || || || || | ||||| ||||| || || | Sbjct 132297 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 132238 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | | | || ||||| || || ||||| ||||| || || | | ||| || || | Sbjct 132237 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCG 132178 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 ||||||| || |||||||| | ||||| || | | ||||| || || | || | Sbjct 132177 AAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGC 132118 Query 17136 T-GTTACGAATCCATTTC--TGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTT 17192 | || | ||| ||| ||| || ||| | ||| ||| | | ||| || |||| Sbjct 132117 GCGAGTCGCA-CCACTTCAATGC-CCAACTGGCCTTCTTGGTC-ACGCATGGGATGGTTT 132061 Query 17193 CTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 | ||||| | || | || || || |||| | || || || || || | | Sbjct 132060 CGATGGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAA 132001 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | ||||| ||||||||| ||||| || ||||| ||||| |||||||||||||| || | Sbjct 132000 GCGAGTACACTTCGGAGTGAATGTTTTCAATGGCGATCTGGAATCCGTAAAAGCAGCGCG 131941 Query 17313 CTTCCGCTATTTGAACTT--CCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCC 17370 | || | | ||| |||| | || | | || | ||| || ||||||||||| || || Sbjct 131940 CCTCAGGCACTTGCACTTCACTACTGAAATTCAT--CGCAAGGTTTTCGTTCACAATCCC 131883 Query 17371 GTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAG 17430 ||||| || || || |||||||| | ||||| ||||| | ||||| || | Sbjct 131882 ATCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCAT 131823 Query 17431 AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGC 17490 | ||||||||| | || | | ||||| |||||| | |||||||||||| || Sbjct 131822 CTTGACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGC 131763 Query 17491 CACTGCCTTTTTATACAT 17508 | ||||| || ||||| Sbjct 131762 TTCAGCCTTCTTGTACAT 131745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517543788590400