Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 >seq2 Length=1145976 Score = 143 bits (158), Expect = 3e-29 Identities = 312/459 (68%), Gaps = 10/459 (2%) Strand=Plus/Minus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| | ||||| ||||| || || | ||||| || | ||||| ||||| || || | Sbjct 132297 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 132238 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 || | | || ||||| || || ||||| |||||||| || | |||| || || ||| Sbjct 132237 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGG-AGCAGAAGGAACCC 132179 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCA--T 16370 |||||||| || ||||| |||| ||||| || | | ||||| || || | |||| Sbjct 132178 GAAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCG 132119 Query 16371 CTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTT 16430 | | | || | ||| ||| | |||| ||| || | | | || || |||| Sbjct 132118 CGCGAGT-CGCA-CCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTT 132061 Query 16431 CTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTA 16490 | ||||| | ||| | || || || || | || || || ||||||| | Sbjct 132060 CGATGGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAA 132001 Query 16491 AACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAG 16550 ||||| ||| ||||| ||||| || ||||| ||||| ||||| || ||||| || | Sbjct 132000 GCGAGTACACTTCGGAGTGAATGTTTTCAATGGCGATCTGGAATCCGTAAAAGCAGCGCG 131941 Query 16551 CCTCCGCTATTTGTACTT--CCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACC 16608 |||| | | ||| |||| | || ||| || | ||| ||||| || ||||| || || Sbjct 131940 CCTCAGGCACTTGCACTTCACTACTGAAATTCAT--CGCAAGGTTTTCGTTCACAATCCC 131883 Query 16609 GTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || || |||||||| |||||||| | |||||| ||||| Sbjct 131882 ATCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAA 131844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511412610049600