Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 221 1e-52 seq22 114 1e-20 seq78 113 5e-20 >seq2 Length=1145976 Score = 221 bits (244), Expect = 1e-52 Identities = 416/609 (68%), Gaps = 2/609 (0%) Strand=Plus/Plus Query 116590 CGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTA 116649 ||||||||| || || ||| | ||||| || ||| | ||||| ||||| |||||| Sbjct 131690 CGAGAACCCAAATCGATTTGTGTTGTTCCCAATCCAAGAGCCGGAAGTGTGGGCCATGTA 131749 Query 116650 CAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAG 116709 ||| ||||| || ||| || ||||||| || || |||| || | ||| || Sbjct 131750 CAAGAAGGCTGAAGCGAGTTTTTGGACCGCTGAAGAACTGGATTTGGTGCATGACCTGAA 131809 Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||| ||| ||||||||| ||| |||||||||||||| |||| || || Sbjct 131810 GGACTGGGTCAAGATGACCGACAACGAACGCTTCTTCATCAAGCACGTCTTGGCGTTCTT 131869 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA-GCGTTTCGCTCAGGAGGTGC 116828 || |||||||| || || || ||||| || || | ||| | |||| | || |||| Sbjct 131870 TGCTGCCAGCGATGGGATTGTGAACGAAAACCTTG-CGATGAATTTCAGTAGTGAAGTGC 131928 Query 116829 AGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGG 116888 | ||| | |||||||| ||||| ||||| || ||||||||||| || ||| | ||||| | Sbjct 131929 AAGTGCCTGAGGCGCGCTGCTTTTACGGATTCCAGATCGCCATTGAAAACATTCACTCCG 131988 Query 116889 AAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGT 116948 || |||| ||| | || ||||| ||| | || |||||| || ||| Sbjct 131989 AAGTGTACTCGCTTTTGATTGACACATACATCAAAGACCCGACCGAGAAGGACCACTTGC 132048 Query 116949 TGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGA 117008 | |||||||| || || || ||||| | |||||||| ||||| || ||| Sbjct 132049 TACGTGCCATCGAAACCATCCCATGCGTGACCAAGAAGGCCAGTTGGGCATTGAAGTGGT 132108 Query 117009 TCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCG 117068 || | | | || |||| | || || | |||| || ||||| |||||||| Sbjct 132109 GCGACTCGCGCGCTGCTGCCTATGCTGAACGGATTTTGGCATTTGCGGCTGTCGAGGGAA 132168 Query 117069 TCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCG 117128 ||||||||||||| ||| | |||| || ||| | ||||| || || |||||||| | Sbjct 132169 TCTTCTTTTCGGGTTCCTTCTGCTCCATCTTCTGGTTGAAGAAGCGTGGGCTCATGCCTG 132228 Query 117129 GCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCT 117188 | || | |||| || || |||||| | || || || |||| || |||||||| | Sbjct 132229 GTCTCAGTTTCTCGAATGAACTCATCAGTCGTGATGAAGGGTTGCACTGTGACTTTGCGT 132288 Query 117189 GTTTGCTGT 117197 | ||| ||| Sbjct 132289 GCTTGATGT 132297 >seq22 Length=480975 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | ||||| || |||||||| | ||||||||| | || Sbjct 154227 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACCATCACATTGGACGTCGAACCGTCC 154168 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | |||| |||| |||| ||||| || |||||||| | || ||| Sbjct 154167 GACTCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAG 154108 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || || || ||||| || || | ||||| | | |||||||||| Sbjct 154107 CAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAAC 154048 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||||||| | || |||| | || ||||| || | || ||| Sbjct 154047 ATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGGC 154000 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | ||||| || |||||||| | ||||||||| | || Sbjct 171653 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACCATCACATTGGACGTCGAACCGTCC 171712 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | |||| |||| |||| ||||| || |||||||| | || ||| Sbjct 171713 GACTCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAG 171772 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || || || ||||| || || | ||||| | | |||||||||| Sbjct 171773 CAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAAC 171832 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||||||| | || |||| | || ||||| Sbjct 171833 ATTCAGAAGGAGTCGACATTGCACTTGGTATTGCG 171867 >seq78 Length=145407 Score = 113 bits (124), Expect = 5e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| || |||||||| |||||||| | ||||| ||| | Sbjct 113213 AAGATGCAGATCTTCGTCAAAACTCTTACGGGCAAGACCATCACGCTGGACGTGGAACCT 113154 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||||| | | |||| ||||| |||| || | ||||| || || || || | || Sbjct 113153 TCGGACAGCATTGACAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTCCAGA 113095 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||||| || |||| || ||||| || |||| || | ||||| || ||||| Sbjct 113094 TCAGCAACGTCTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACGCTTTCGGACTA 113035 Query 40866 CAACATCCAGAAGG 40879 ||||||||| |||| Sbjct 113034 CAACATCCAAAAGG 113021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217396732800