Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq22 120 5e-22 >seq22 Length=480975 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 124533 AATACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA 124592 || |||||||| || || | |||||||| || ||||| || || || | || | ||| Sbjct 154461 AAGACAATGCAGATCTTCGTGAAGACACTCACCGGCAAGACCATCACGTTGGACGTCGAA 154402 Query 124593 GCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652 | || | || || | || ||||| ||||| ||||| |||||||| || ||| Sbjct 154401 CCGTCCGACTCGATCGACAACGTGAAGCAGAAGATTCAGGATAAGGAAGGTATTCCTCCT 154342 Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712 |||||||| | | |||||||| ||||| || | || || |||| || || || Sbjct 154341 GATCAACAGCGTTTGATTTTTGCTGGAAAGCAGCTGGAAGACGGTCGTACTTTGAGCGAC 154282 Query 124713 TATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||||| || ||||| ||||| | ||| | ||||||||||| Sbjct 154281 TATAATATTCAGAAGGAATCGACATTGCACTTGGTGCTTCGTCTGCGAGGTGGTAT 154226 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 124533 AATACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA 124592 || |||||||| || || | |||||||| || ||||| || || || | || | ||| Sbjct 171419 AAGACAATGCAGATCTTCGTGAAGACACTCACCGGCAAGACCATCACGTTGGACGTCGAA 171478 Query 124593 GCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652 | || | || || | || ||||| ||||| ||||| |||||||| || ||| Sbjct 171479 CCGTCCGACTCGATCGACAACGTGAAGCAGAAGATTCAGGATAAGGAAGGTATTCCTCCT 171538 Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712 |||||||| | | |||||||| ||||| || | || || |||| || || || Sbjct 171539 GATCAACAGCGTTTGATTTTTGCTGGAAAGCAGCTGGAAGACGGTCGTACTTTGAGCGAC 171598 Query 124713 TATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||||| || ||||| ||||| | ||| | ||||||||||| Sbjct 171599 TATAATATTCAGAAGGAATCGACATTGCACTTGGTGCTTCGTCTGCGAGGTGGTAT 171654 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || || ||||| || ||| | || | || | Sbjct 153999 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTCG 153940 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| ||| | || || ||||| |||||||| |||||||| || ||||||||| Sbjct 153939 GACTCTATTGACAATGTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCTGATCAA 153880 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || ||||| || || || ||| |||| || || || ||||| Sbjct 153879 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACGTTGAGCGACTATAAC 153820 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | || ||||| | ||| | || |||||||| Sbjct 153819 ATCCAAAAGGAGTCGACGCTCCACTTGGTGCTTCGTCTGCGTGGTGGTAT 153770 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || ||||| || || ||| | || | ||| | Sbjct 153771 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 153712 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| || | || ||||| || || || || |||||||| || || |||||| Sbjct 153711 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 153652 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || |||||||| || || || | || || |||| || || ||||| ||| Sbjct 153651 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 153592 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||||| ||||| || ||||| ||||| | ||| | || ||||| Sbjct 153591 ATTCAAAAGGAATCGACATTGCACTTGGTGCTTCGTCTTCGCGGTGG 153545 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || ||||| || || ||| | || | ||| | Sbjct 171881 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 171940 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| || | || ||||| || || || || |||||||| || || |||||| Sbjct 171941 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 172000 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || |||||||| || || || | || || |||| || || ||||| ||| Sbjct 172001 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 172060 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||||| ||||| || ||||| ||||| | ||| | || ||||| Sbjct 172061 ATTCAAAAGGAATCGACATTGCACTTGGTGCTTCGTCTTCGCGGTGG 172107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755453355904000