Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq22 152 4e-32 >seq22 Length=480975 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| |||||||| | ||| ||||| || ||||||||||| |||| Sbjct 171881 TACCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGC 171822 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| ||||| |||||| ||||| |||||||| |||||||||| |||||||| |||| Sbjct 171821 TCAACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAG 171762 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| ||||||||| ||| |||||||| || | |||| | ||| | |||| Sbjct 171761 GGATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGA 171702 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || || || || | || || ||||| |||||||| Sbjct 171701 CGTCCAATGTGATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 171653 Score = 150 bits (166), Expect = 2e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||||||| | ||| ||||| || ||||||||||| ||||||| ||||| ||| Sbjct 154015 CAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATC 154074 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| |||||||| |||||||||| |||||||| ||||| ||||| |||||||| Sbjct 154075 CTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTC 154134 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||| |||||||| || | |||| | ||| | ||||| || | || | || Sbjct 154135 TTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATGGT 154194 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || | || || ||||| |||||||| Sbjct 154195 CTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 154227 Score = 132 bits (146), Expect = 4e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| ||||| ||||| || ||||||| ||||| ||| || Sbjct 153790 CACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCTTC 153849 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| ||||||||| | || | |||||| ||||| ||||| || || ||||| ||| Sbjct 153850 CAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCTTG 153909 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||||| || || | || | | ||||| | ||| || || | || | |||||| Sbjct 153910 GATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTTTT 153969 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| || || ||||| ||||||||| Sbjct 153970 CCCCGTCAACGTCTTCACAAAGATCTGCATG 154000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828919553760