Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq22 131 1e-25 seq78 107 1e-18 seq27 87.8 1e-12 >seq22 Length=480975 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| || || ||| ||||| || || |||||| | Sbjct 154229 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 154288 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| |||| |||| |||||| || || ||||| | ||||| || || || Sbjct 154289 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 154348 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || ||||| ||||| | | | | ||||| |||| || ||||||| Sbjct 154349 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 154408 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||| ||||||||||| || ||||| ||||||||||| Sbjct 154409 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCAT 154455 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| || || ||| ||||| || || |||||| | Sbjct 171651 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 171592 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| |||| |||| |||||| || || ||||| | ||||| || || || Sbjct 171591 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 171532 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || ||||| ||||| | | | | ||||| |||| || ||||||| Sbjct 171531 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 171472 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||| ||||||||||| || ||||| ||||||||||| Sbjct 171471 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCAT 171425 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| || || || ||||| |||||||||||| | Sbjct 154001 CCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTC 154060 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | || | || || | |||||| || || || ||||| || ||||| || || Sbjct 154061 AACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGG 154120 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| |||||||| || | || | ||||| |||| || ||||||| Sbjct 154121 ATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACG 154180 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || || | || ||||||||||||||||| Sbjct 154181 TCCAATGTGATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 154227 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| || || || ||||| |||||||||||| | Sbjct 171879 CCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTC 171820 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | || | || || | |||||| || || || ||||| || ||||| || || Sbjct 171819 AACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGG 171760 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| |||||||| || | || | ||||| |||| || ||||||| Sbjct 171759 ATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACG 171700 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || || | || ||||||||||||||||| Sbjct 171699 TCCAATGTGATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 171653 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||||| ||| || || ||| || || || ||||| || | Sbjct 153545 CCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTC 153604 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| |||| |||| |||||| || || |||||||| || || || || || Sbjct 153605 AAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGA 153664 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||||| | | | | || || || | | ||| || Sbjct 153665 ATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACA 153724 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || | || ||||| ||||||||||| Sbjct 153725 TCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 153771 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||||| ||| || || ||| || || || ||||| || | Sbjct 172107 CCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTC 172048 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| |||| |||| |||||| || || |||||||| || || || || || Sbjct 172047 AAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGA 171988 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||||| | | | | || || || | | ||| || Sbjct 171987 ATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACA 171928 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || | || ||||| ||||||||||| Sbjct 171927 TCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 171881 >seq78 Length=145407 Score = 107 bits (118), Expect = 1e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 || || ||||||||||| || ||| ||| | || ||||| |||||||| || || || Sbjct 113023 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 113082 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || || ||||| || || | | |||||||| ||||||||||| | | | | Sbjct 113083 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCA 113142 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || || | | ||| ||||||| ||||||||| ||||| || |||||||| || ||| Sbjct 113143 ATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGAAG 113202 Query 34382 ATCTGCATC 34390 ||||||||| Sbjct 113203 ATCTGCATC 113211 >seq27 Length=441917 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || ||||| ||| | || || || ||||| ||||||||||| ||| Sbjct 63539 CCACCACGCAGACGCAACACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 63598 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 ||| ||| |||| ||||| |||||||| || || || || |||||||| || Sbjct 63599 AGCGTGCGGCCGTCTTCCAATTGCTTGCCAGCAAAGATCAGACGCTGCTGATC 63651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070897516800