Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq17 170 4e-37 seq2 107 4e-18 >seq17 Length=584494 Score = 170 bits (188), Expect = 4e-37 Identities = 684/1068 (64%), Gaps = 72/1068 (7%) Strand=Plus/Minus Query 248417 CCATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGG 248476 |||||||| | | |||||| |||||||| ||| |||| ||||||||||| | | Sbjct 105186 CCATGTACGTGATCAAGCGTGACGGGCGTCGGGAAGACGTCAAATTCGACAAAATTACAG 105127 Query 248477 CGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCG 248536 |||| |||| || ||||| ||||| || | | | | ||| ||| ||| ||| Sbjct 105126 CGCGTATCACCAAACTCTGCTATGGACTCAATGACGAATACGTGGATGCTGTCAAGATCT 105067 Query 248537 CCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAG 248596 | || || || | | || || ||| |||| || || ||| | ||| ||||| || | Sbjct 105066 CGCAAAAGGTCGTCGCTGGAGTATACCCCGGTGTGACGACGTCGGAATTGGACGAATTGG 105007 Query 248597 CTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGA 248656 ||||||| || || ||||| |||| ||||| || | ||| |||| | | Sbjct 105006 CTGCGGAAACAGCCGCGTATTGTGCGACACAGCACCCAGATTTCTCAAAATTGGCTGCGC 104947 Query 248657 GGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAA---------------------GAGT 248695 |||| || ||||| | | ||||| | ||||| |||| Sbjct 104946 GGATTGCTGTCTCGAATTTGCACAAGAATACGAACAAGGTTTTCAGTGAAAATGTTGAGT 104887 Query 248696 CGTTCGTCGAAACCATGGCTGACCTACATGCCTATGG------GATGGTCGCCGATGACG 248749 |||| | ||| || | || | | | | | | | || | |||||||| | Sbjct 104886 TGTTCCACAAAAACAAGCACGAAGTGAACGGCCAAGCAGCTCCGTTGATTGCCGATGATG 104827 Query 248750 TCCAC---ACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCA 248806 || || | | |||| || |||| | || | ||| || || || | ||| | Sbjct 104826 TCTACGAGATCATCATGAAGCACAAGG---ACGTACTGAACTCGGCCATCATCCACGACC 104770 Query 248807 AAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAA 248866 || || || ||||||| ||||| ||||| ||||| ||| ||||||| | || Sbjct 104769 GTGACTTTGAATACGATTACTTTGGCTTCAAGACGCTTGAGCGATCGTATTTATTCCGTG 104710 Query 248867 TTGATGGCAAGATCGTG-GAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATT 248925 | | ||| || | ||| |||||| ||||| ||| | ||||| || ||||| || || Sbjct 104709 TGGGTGGGAAAGT-GTGCGAACGACCGCAGCAAATGATCATGCGTGTCGCTGTAGGCATC 104651 Query 248926 CACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACG-----CT 248980 || || || || || || ||||| |||||||| ||||| | | || Sbjct 104650 CATAAAGAAGATATCAAGCTGGTGCTTGAGACGTA--------TGAGTACATGTCGCTCT 104599 Query 248981 GGATG---ACACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAG 249033 | | || || |||||||| || || || ||||| ||||| || | |||| Sbjct 104598 CGTTCTTCACGCACGCCACACCAACACTGTTTAACGCAGGTACACCACGGCCACAA---- 104543 Query 249034 CTGAGCTCGTGCTTTCTTCTTG-CCATGCAAGACGACTCTGTCGACGGCATTTATGACAC 249092 ||| ||||| |||||| ||| ||||||||||||| ||| | || |||||||| ||||| Sbjct 104542 CTGTCTTCGTG-TTTCTTATTGGCCATGCAAGACGATTCTATTGAGGGCATTTACGACAC 104484 Query 249093 GCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAA 249152 || || || || || || || | || || || ||||| || | | ||| Sbjct 104483 TCTCAAGCAATGCGCATGCATCTCCAAGTGGGCAGGGGGTATCGGCATCAGCATGCACAA 104424 Query 249153 CATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGG--GTCAGTGATGGTATCGTA 249210 ||| || |||| | | |||||| ||||||||||| ||| | ||||| || Sbjct 104423 CATTCGCGCGACGAATAGCTACATCCGTGGTACAAATGGCACGTCCA--ACGGTATTGTG 104366 Query 249211 CCCCTCCTTCGATGCTTTGAGTC-CACCGCCAGGTTCATCAACCAGGCCGGGCGC---CG 249266 || | | || || || | | ||| || | | | | | || | || || || Sbjct 104365 CCTATGTTGCG-TGTGTTCAATGACACTGCTCGTTACGTTGATCAAGGTGGTGGCAAGCG 104307 Query 249267 AAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGA 249326 ||||||||||| || || |||||||| |||||| ||||| |||| ||||||||||| Sbjct 104306 CAAGGGGTCGTTTGCAATCTATTTGGAGCCGTGGCATGCCGACGTATTTGAGTTCCTGGA 104247 Query 249327 CTTGAAAAAGAACAACGGCAACGAGC-TCATGAGAGCGCGTGACCTCTTCTACGGCCTGT 249385 |||| ||||| |||| || || | |||| | || ||||| || || |||| | ||| Sbjct 104246 TTTGAGGAAGAATCACGGTAATGAACTTCAT-CGTGCACGTGATCTGTTTTACGCCATGT 104188 Query 249386 GGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGA 249433 || || | || ||||||||| || || | ||| ||||||| |||| Sbjct 104187 GGATCCCAGATTTGTTCATGAAGCGTGTGGAAGCCAACGGCGAGTGGA 104140 >seq2 Length=1145976 Score = 107 bits (118), Expect = 4e-18 Identities = 130/175 (74%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 254205 CCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCC 254264 || || |||||| || | | || ||||||||||| ||||||| | ||| |||||||| Sbjct 291404 CCACCATTCAAGATCATCGTACTTGACGAGGCGGATTCCATGACAGGCGATGCGCAGTCG 291345 Query 254265 GCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAAC 254324 || | ||||||| |||||| | | ||| || || || |||||| || | |||||| Sbjct 291344 GCGTTGCGCCGAATGATGGAAAACTATTCCAAGGTTACCCGGTTTTGCTTGATTTGCAAC 291285 Query 254325 TACGTG--TCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 |||||| ||||| |||| | || |||| ||||||||||| ||||| || || Sbjct 291284 TACGTGAGTCGAA--TCATTGAACCAGTGGCGTCTCGGTGCGCAAAGTTCCGGTT 291232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073762547863040