Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq22 131 1e-25 seq78 91.5 1e-13 seq27 84.2 2e-11 >seq22 Length=480975 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| ||||| |||||| || ||||| |||||| ||| |||| | || ||| Sbjct 153791 ACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCTTCC 153850 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || ||||| ||||| ||||| |||||||| || ||||| | ||| ||||| || Sbjct 153851 AACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCTTGG 153910 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||||||||| || | | |||| |||||| |||| |||||||| || Sbjct 153911 ATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTTTTC 153970 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| |||||||||||||| |||||| Sbjct 153971 CCCGTCAACGTCTTCACAAAGATCTGCATG 154000 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || | | |||||||||| || ||||||||||| || |||||| || Sbjct 154229 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 154288 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| |||| ||||| || ||||| || || ||||| |||||||| || ||||| Sbjct 154289 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 154348 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||| ||| ||| || ||||| || | | ||| || || Sbjct 154349 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 154408 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || |||||||| || || |||||||| ||||| ||||| Sbjct 154409 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCAT 154455 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || | | |||||||||| || ||||||||||| || |||||| || Sbjct 171651 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 171592 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| |||| ||||| || ||||| || || ||||| |||||||| || ||||| Sbjct 171591 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 171532 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||| ||| ||| || ||||| || | | ||| || || Sbjct 171531 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 171472 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || |||||||| || || |||||||| ||||| ||||| Sbjct 171471 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCAT 171425 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || | ||||||||||||| || |||||||||||||||||||||| | Sbjct 154000 GCCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCT 154059 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || |||| | || || || || ||||| || || || | || || || || ||||| Sbjct 154060 CAACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGG 154119 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || |||||||| ||| ||||| || || | | ||| || || Sbjct 154120 GATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGAC 154179 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| ||||| | |||||||||||||| ||||| Sbjct 154180 GTCCAATGTGATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 154227 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 ||||||||||||| || |||||||||||||||||||||| ||| |||| | || Sbjct 171864 AATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCC 171805 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || ||||| || || || | || || || || ||||| | || |||||||| Sbjct 171804 TCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCT 171745 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| ||||| || || | | ||| || || |||| || || ||| Sbjct 171744 TGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATGGTC 171685 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| | |||||||||||||| ||||| Sbjct 171684 TTCCCCGTTAATGTCTTCACAAAGATCTGCAT 171653 >seq78 Length=145407 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 |||| || ||||||||||| || ||| | || |||| ||| || || || || | Sbjct 113021 CCTTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGA 113080 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| || || || || ||||| | || ||||||||| || |||||||| || Sbjct 113081 TCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGT 113140 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | ||||||| | ||||| |||| || || ||||||||||| ||||| || || | Sbjct 113141 CAATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGA 113200 Query 45327 AGATTTGCATGTT 45339 |||| ||||| || Sbjct 113201 AGATCTGCATCTT 113213 >seq27 Length=441917 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| ||||||||||||||||| ||||||||||| ||| ||| |||| Sbjct 63554 AACACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCT 63613 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 |||| ||| || || || || |||| ||||| || || ||||| Sbjct 63614 TCCAATTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGAGG 63657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073851805880