Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq58 120 6e-22 seq17 95.1 2e-14 >seq58 Length=246340 Score = 120 bits (132), Expect = 6e-22 Identities = 300/451 (67%), Gaps = 10/451 (2%) Strand=Plus/Minus Query 35249 TTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAA 35308 || ||| | ||||||| ||||| | |||||||||||| ||| | || | ||||| Sbjct 6369 TTTTGGCGTGGAGTTGCAGAAGAGTTACTGTGGTTCATCAGTGGCGACACGAATGCCAAG 6310 Query 35309 GAATTGGCCAAGA--AGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGG 35366 | | ||| || |||| || | |||||| ||| ||||| ||| | |||| |||| Sbjct 6309 ACACT--CCAGGACAAGAACATTCGTATCTGGGACGGCAATGGCTCGAGAGAATACTTGG 6252 Query 35367 ACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAAT 35426 |||| | || | | | | | | || || | ||||||||||| || || || | Sbjct 6251 ACAGCATTGGACTCGAAAACCGTGAAACTGGTGACCTTGGACCCGTATATGGGTTTCAGT 6192 Query 35427 GGCGTCATTTTGGTGCTGAATATG---ATACCTGTTCTTCCGATTATACTGGAAAGGGTA 35483 |||| ||||| || || | || ||| || | ||||||| ||||| ||||| Sbjct 6191 GGCGACATTTCGGCGCCAAGTACACCAATA--TGCACG-CCGATTACACTGGCCAGGGTG 6135 Query 35484 TTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGA 35543 | ||||| | ||| | | | | | || | | |||||| | || | | || | Sbjct 6134 TCGATCAGCTCGCCGACGTGATTCACAAGCTCAAAACAAATCCGAACGACCGTCGCATCA 6075 Query 35544 TTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGA 35603 | ||| | || |||||||| |||| | | ||||| || ||||||||||||||| Sbjct 6074 TCATGTCAGCCTGGAATCCAGCGGATTTGAAGGAGATGGCACTCCCTCCATGCCACATGT 6015 Query 35604 CTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAG 35663 | |||||| ||||| |||||||| ||| | |||||| |||| ||||| | || Sbjct 6014 TTTGTCAATTCTATGTCGCTAATGGTGAACTTAGCTGCCAGATGTACCAGCGCTCGGCAG 5955 Query 35664 ATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | | ||| ||||||| || |||||||| || Sbjct 5954 ACATGGGGCTGGGCGTCCCATTCAATATCGC 5924 >seq17 Length=584494 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 93603 ACGATTATACATGTTGGACGTTAAAGGCTCAAAGGATTCAGAGTTGCCCAGGATCTGTGC 93662 ||| || |||||||||||||| || ||||||| ||||||| ||||||| |||||| || Sbjct 103304 ACGGTTGTACATGTTGGACGTGAATGGCTCAATGGATTCATTATTGCCCAAGATCTGAGC 103363 Query 93663 AGTGGATGCAGTAGGCATGGGAGCAACAAACATTGAATTGTGAACACCAT 93712 ||| || || || |||||||| || | |||| || ||| | ||||||| Sbjct 103364 AGTCGACGCCGTTGGCATGGGCGCCAACAACAGGGAGTTGCGCACACCAT 103413 Score = 91.5 bits (100), Expect = 3e-13 Identities = 177/259 (68%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 94782 GATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAAT 94841 |||||||| || || || |||||||||| ||| | ||| ||||| || ||||| Sbjct 104435 GATGCCGATACCCCCTGCCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAAT 104494 Query 94842 ACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGT-GTGA 94900 |||||||| ||| ||||| | | ||| | ||| ||||| || ||||| || ||| Sbjct 104495 GCCCTCAATAGAATCGTCTTGCATGGCCAATAAGAAACACGAAGACAGTTGTGGCCGTGG 104554 Query 94901 CTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGAT 94960 ||| || ||||||||||| || | || || || || | ||||||| | Sbjct 104555 -TGTACCTGCGTTAAACAGTGTTGGTGTGGCGTGCGTGAAGAACGAGAGCGACATGTACT 104613 Query 94961 CATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAA 95020 |||| || |||| || ||||| ||| | || ||||| ||||| |||||||| | Sbjct 104614 CATACGTCTCAAGCACCAGCTTGATATCTTCTTTATGGATGCCTACAGCGACACGCATGA 104673 Query 95021 TCATGTCCTGAGGGCGCTC 95039 |||| | ||| || || || Sbjct 104674 TCATTTGCTGCGGTCGTTC 104692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989580449867400