Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 210 3e-49 seq17 147 3e-30 >seq2 Length=1145976 Score = 210 bits (232), Expect = 3e-49 Identities = 415/608 (68%), Gaps = 11/608 (2%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||||||| || || || || ||||||| || || || | ||| || | ||| || || | Sbjct 132297 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 132238 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | |||| || ||||| || |||||||| || | ||| || ||||| ||| || || | Sbjct 132237 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCG 132178 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGC 33750 ||||||||||||| || || || ||||| || | || | || |||| | | |||| Sbjct 132177 AAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGC 132118 Query 33751 ---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33807 ||| | | |||||| |||||| ||||||||| | || || || || |||| Sbjct 132117 GCGAGTC--GCA-CCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTT 132061 Query 33808 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33867 | |||||| | | | || || || | ||||| | || || || ||||||| Sbjct 132060 CGATGGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAA 132001 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 | |||| ||| || ||||||||||||||||| ||||| |||||||| || || | | Sbjct 132000 GCGAGTACACTTCGGAGTGAATGTTTTCAATGGCGATCTGGAATCCGTAAAAGCAGCGCG 131941 Query 33928 CCTCGGTAATCTGCACTTCTGTAC-AAAATCGTTCTGCTAAATTTTCATTCACTATTCCA 33986 |||| | | |||||||| ||| |||| || || | ||||| ||||| || ||| Sbjct 131940 CCTCAGGCACTTGCACTTCACTACTGAAATTCATC-GCAAGGTTTTCGTTCACAATCCCA 131882 Query 33987 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 34046 || ||||| ||||| |||||||| || || || || || | ||||| || | Sbjct 131881 TCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCATC 131822 Query 34047 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 34106 || ||| || || | || | | ||||| |||||| | |||||||| || Sbjct 131821 TTGACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCT 131762 Query 34107 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTA 34166 || ||||| || ||||| ||| | || | | |||||||||||| | ||||||| | Sbjct 131761 TCAGCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCGA 131702 Query 34167 TTTGGATT 34174 ||||| || Sbjct 131701 TTTGGGTT 131694 >seq17 Length=584494 Score = 147 bits (162), Expect = 3e-30 Identities = 714/1121 (64%), Gaps = 30/1121 (3%) Strand=Plus/Plus Query 62694 GTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAG 62753 |||||||| || | ||| || | ||| | |||| | || || || || | | | Sbjct 103587 GTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGCTCACTTTCGAAGGGGAACCCCATG 103646 Query 62754 AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62813 ||||||||||| || || || ||||| ||||||||||| | ||| | ||||| |||| Sbjct 103647 AGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGGCGATGTCGTAGATTA 103706 Query 62814 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62873 || | |||||||| || ||||| || || ||||| || | || || ||||||||| Sbjct 103707 GATCGCTTGGCTTCTGGGATCGGATAGTAGTTGATATCAATGACCTTGTTCAGATTTCTG 103766 Query 62874 ---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACA 62930 ||||| ||| | | || | || || |||| | ||| |||| ||| Sbjct 103767 GTCACAAT--CTTCG-TGATTTCGTAGAGCTTCTGAAAGTTAAACACACCATTGTCGACA 103823 Query 62931 AACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCAT--TAGCATCCGCAT 62988 || || || ||||| || |||| || ||||| || || || | | | || | | Sbjct 103824 AATTTGGACAGTGCAATGGACGCCAAGTTGCACACCGCGACTTCGTCCTTGGAT--GTGT 103881 Query 62989 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 63048 | | | | |||| ||| | ||||| | ||||| || || ||||| ||||| Sbjct 103882 ACTCGACGACCTCACAGCACAAGTTACTGGAGCGAATAGTGCCCAAGTTTTGCTGATTCG 103941 Query 63049 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63108 ||| || || |||||||| || || ||| | || || || ||||| ||||||| | Sbjct 103942 ACTTGCGATTGCATGCATCCTTGTAGAGCATGTAGGGTGTGCCGGTTTCGATCTGAGCGT 104001 Query 63109 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT-- 63166 | | ||| || ||| | | | ||||| || | | | || | || Sbjct 104002 CCAAAATGGCGAACCACAATTGTTGCGCCTTGAT----GGTCTTGCGGGCCAAGCCCTGG 104057 Query 63167 --TTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGA 63224 |||||| || ||||| ||||| || || ||||| | | || | || Sbjct 104058 GCTTCGTACTTGGTGTACAAGGCCTCGAATTCATCACCCCAGCAGTCGAACAGACCAGTC 104117 Query 63225 CATTCATCCGGACACATCAACGA--CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63282 ||||| || || | || || |||||| |||| | | ||| || ||||| || | Sbjct 104118 GCTTCATTAGGGCAGA--AAAGACTCCACTCGCCGTTGGCTTCCACACGCTTCATGAACA 104175 Query 63283 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTAT 63342 ||| || ||||| | || ||| ||||| | || | ||| || || || || Sbjct 104176 AATCTGGGATCCACATGGCGTAAAACAGATCACGTGCACGATGAAGTTCATTACCGTGAT 104235 Query 63343 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC-C 63401 |||| | | ||| |||||| | | | || | ||||||||| ||||| || || || Sbjct 104236 TCTTCCTCAAATCCAGGAACTCAAATACGTCGGCATGCCACGGCTCCAAATAGATTGCAA 104295 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | || || | || ||| || || ||||| | ||| | ||| |||| ||| | || Sbjct 104296 ACGACCCCTTG-CGCTTGCCACCACCTTGATCAACGTAACGAGCAGTGTCATTGAACACA 104354 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 | |||||| || | ||||||||| || | ||||| ||||| ||| |||| | Sbjct 104355 CGCAACATAGGCACAATACCGTTGGACGTGCCATTTGTACCACGGATGTAGCTATTCGTC 104414 Query 63522 GCACGAATATTACTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 || ||||| || || |||| || || ||||||||| || ||||| |||||| Sbjct 104415 GCGCGAATGTTGTGCATGCTGAT--GCCGATACCCCCTGCCCACTTGGAGATGCATGCGC 104472 Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639 || | || | ||||| || ||||| || || ||| || |||| | || |||| Sbjct 104473 ATTGCTTGAGAGTGTCGTAAATGCCCTCAATAGAATCGTCTTGCATGGCCAATAAGAAAC 104532 Query 63640 AGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699 | ||||| ||| | || | || || || ||||| | || || | |||||||| | Sbjct 104533 ACGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAACAGTGTTGGTGTGGCGTGCGTGA 104592 Query 63700 ACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63758 | | || | ||| | |||||||||| | | ||||| || ||| Sbjct 104593 AGAACGAGAGCGACATGTA-CTCATACGTCTCAAGCACCAGCTTGATATCTTCTTTATGG 104651 Query 63759 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 || ||||| ||||||||||| | ||| ||||| |||| ||| Sbjct 104652 ATGCCTACAGCGACACGCATGATCATTTGCTGCGGTCGTTC 104692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815395638400