Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 179 5e-40 seq17 125 9e-24 >seq2 Length=1145976 Score = 179 bits (198), Expect = 5e-40 Identities = 405/601 (67%), Gaps = 7/601 (1%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||||||| || || || || ||||| | || || || | ||| || | ||| || || | Sbjct 132297 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 132238 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | |||| || ||||| || |||||||| || | ||| || ||||| ||| || || || Sbjct 132237 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGA-GCAGAAGGAACCC 132179 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 |||||||| ||||| || || |||||||| || | || | || |||| | ||| | Sbjct 132178 GAAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCG 132119 Query 36329 T-CATGTATC--CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | || | ||||| |||||| ||||||||| | || || || || || || Sbjct 132118 CGCGAGTCGCACCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCG 132059 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 || ||| | | | || || || | ||||| | ||||| ||||||||||| Sbjct 132058 ATGGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAAGC 131999 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 |||| ||| || ||||||||||||||||| || || |||||||| || || | ||| Sbjct 131998 GAGTACACTTCGGAGTGAATGTTTTCAATGGCGATCTGGAATCCGTAAAAGCAGCGCGCC 131939 Query 36506 TCGGTAATCTGTACTTCTGTAC-AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 36564 || | | || ||||| ||| |||| || || | ||||| ||||| || || || Sbjct 131938 TCAGGCACTTGCACTTCACTACTGAAATTCATC-GCAAGGTTTTCGTTCACAATCCCATC 131880 Query 36565 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTT 36624 ||||| ||||| |||||||| || || || || || | |||||| || | || Sbjct 131879 GCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCATCTT 131820 Query 36625 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 36684 ||| || || | || | | ||||| |||||| | |||||||| || || Sbjct 131819 GACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTC 131760 Query 36685 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 36744 ||||| || ||||| ||| | || | | ||| ||||| || | ||||||| ||| Sbjct 131759 AGCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCGATT 131700 Query 36745 T 36745 | Sbjct 131699 T 131699 >seq17 Length=584494 Score = 125 bits (138), Expect = 9e-24 Identities = 679/1068 (64%), Gaps = 42/1068 (4%) Strand=Plus/Plus Query 65546 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 65605 |||||||||||| || || || ||||| ||||||||||| | ||| | ||||| ||| Sbjct 103646 GAGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGGCGATGTCGTAGATT 103705 Query 65606 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 65665 ||| | |||||||| || ||||| || || ||||| || | || || |||||||| Sbjct 103706 AGATCGCTTGGCTTCTGGGATCGGATAGTAGTTGATATCAATGACCTTGTTCAGATTTCT 103765 Query 65666 G---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTATT-- 65720 | ||||| ||| | | || | || || |||| | ||| | || | ||| Sbjct 103766 GGTCACAAT--CTTCG-TGATTTCGTAGAGCTTCTGAAAGTTAAA---CACA-CCATTGT 103818 Query 65721 --ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATC 65776 ||||| || || ||||| || |||| || || || || || || | | | || Sbjct 103819 CGACAAATTTGGACAGTGCAATGGACGCCAAGTTGCACACCGCGACTTCGTCCTTGGAT- 103877 Query 65777 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 65836 | || | | | |||| ||| | ||||| | || || || || ||||| || Sbjct 103878 -GTGTACTCGACGACCTCACAGCACAAGTTACTGGAGCGAATAGTGCCCAAGTTTTGCTG 103936 Query 65837 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 65896 ||| ||| || || |||||||| || || ||| | || || || ||||| ||||| Sbjct 103937 ATTCGACTTGCGATTGCATGCATCCTTGTAGAGCATGTAGGGTGTGCCGGTTTCGATCTG 103996 Query 65897 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTG------TATCT 65950 || || | ||| || ||| | | | |||| | || | ||| | | Sbjct 103997 AGCGTCCAAAATGGCGAACCACAATTGTTGCGCCT---TGATGGTCTTGCGGGCCAAGCC 104053 Query 65951 CTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA 66010 || | |||||| || ||||| ||||| || || ||||| | | || Sbjct 104054 CTGGGC---TTCGTACTTGGTGTACAAGGCCTCGAATTCATCACCCCAGCAGTCGAACAG 104110 Query 66011 TCCAGGACATTCATCCGGACACATCAACGA--CCACTCTCCGTCATCCTTCACTCGTTTC 66068 |||| ||||| || || | || || |||||| |||| | | ||| || ||| Sbjct 104111 ACCAGTCGCTTCATTAGGGCAGA--AAAGACTCCACTCGCCGTTGGCTTCCACACGCTTC 104168 Query 66069 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTT 66128 || || | ||| || ||||| | || ||| | ||| | | | ||| || || Sbjct 104169 ATGAACAAATCTGGGATCCACATGGCGTAAAACAGATCACGTGCACGATGAAGTTCATTA 104228 Query 66129 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTAT 66188 || |||||| | | ||| |||||| | | | || ||||||||| ||||| || Sbjct 104229 CCGTGATTCTTCCTCAAATCCAGGAACTCAAATACGTCGGCATGCCACGGCTCCAAATAG 104288 Query 66189 ATGGC-CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 66247 || || | || || | || ||| || || ||||| | ||| | ||| |||| ||| Sbjct 104289 ATTGCAAACGACCCCTTG-CGCTTGCCACCACCTTGATCAACGTAACGAGCAGTGTCATT 104347 Query 66248 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 66307 | || | |||||| || | |||||| ||||| || ||||| || || ||| ||||| Sbjct 104348 GAACACACGCAACATAGGCACAATACCGTTGGACGTGCCATTTGTACCACGGATGTAGCT 104407 Query 66308 TCCACTTGCACGAATATTACTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGATT 66365 | || ||||| || || |||| || || ||||||||| || ||||| Sbjct 104408 ATTCGTCGCGCGAATGTTGTGCATGCTGAT--GCCGATACCCCCTGCCCACTTGGAGATG 104465 Query 66366 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 66425 |||||||| | || | || || || |||||||| ||| ||| || |||| | | Sbjct 104466 CATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCAATAGAATCGTCTTGCATGGCCAAT 104525 Query 66426 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 66485 | ||||| ||||| ||| | || || || || ||||| | || || | ||| Sbjct 104526 AAGAAACACGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAACAGTGTTGGTGTGGCG 104585 Query 66486 TGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 66544 ||||| || | || | ||| | |||||||||| | | ||||| Sbjct 104586 TGCGTGAAGAACGAGAGCGACATGTA-CTCATACGTCTCAAGCACCAGCTTGATATCTTC 104644 Query 66545 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 66592 || ||| || ||||| ||||||||||| | ||| ||||| |||| ||| Sbjct 104645 TTTATGGATGCCTACAGCGACACGCATGATCATTTGCTGCGGTCGTTC 104692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658170496395200