Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq58 138 1e-27 >seq58 Length=246340 Score = 138 bits (152), Expect = 1e-27 Identities = 298/446 (67%), Gaps = 0/446 (0%) Strand=Plus/Plus Query 20889 GGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAA 20948 || |||||||| || || | | || || | | || || || ||||||| ||| Sbjct 5777 GGGAACGGACGTGGCGTGCGTCCCAATTGGATCTTGAGCGGCTCCACGTGGTCCAAGTAG 5836 Query 20949 ACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCG 21008 | || |||||||| | | ||| | || || || | |||| |||||||| || ||| Sbjct 5837 ATATGTGCGTCACCAATGACGTGGATGAAATCACCAGCCTTCAGTCCCGTGACCTGTGCG 5896 Query 21009 ATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCG 21068 ||| || || | ||||||||||||||| || || ||||| || || |||||||| Sbjct 5897 ATCGACCGTGTGAGCAAGGCGTAGCTGGCGATATTGAATGGGACGCCCAGCCCCATGTCT 5956 Query 21069 GCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAA 21128 || || | |||||||| ||||||| || || || ||| || || || ||||| || Sbjct 5957 GCCGAGCGCTGGTACATCTGGCAGCTAAGTTCACCATTAGCGACATAGAATTGACAAAAC 6016 Query 21129 ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACG 21188 | ||| || |||||||| |||||| | | ||||| || ||||| || |||| | | Sbjct 6017 ATGTGGCATGGAGGGAGTGCCATCTCCTTCAAATCCGCTGGATTCCAGGCTGACATGATG 6076 Query 21189 ATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACC 21248 ||||| || |||| || | || | | | ||||| ||||| || || Sbjct 6077 ATGCGACGGTCGTTCGGATTTGTTTTGAGCTTGTGAATCACGTCGGCGAGCTGATCGACA 6136 Query 21249 CCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGG 21308 ||||| || ||| | ||||| |||||| || || ||||||| |||||| Sbjct 6137 CCCTGGCCAGTGTAATCGGCGTGCATATTGGTGTACTTGGCGCCGAAATGTCGCCACTGA 6196 Query 21309 AACCCGTACACCGGCCCCAGATCGCC 21334 ||||| || || || || || || || Sbjct 6197 AACCCATATACGGGTCCAAGGTCACC 6222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427774540214400