Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 205 1e-47 seq17 161 1e-34 >seq2 Length=1145976 Score = 205 bits (226), Expect = 1e-47 Identities = 417/609 (68%), Gaps = 13/609 (2%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||||||| || || || || ||||||| || || || | ||| || ||||| || || | Sbjct 132297 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 132238 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | |||| || ||||| || |||||||| || | ||| || ||||| ||| || || || Sbjct 132237 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGA-GCAGAAGGAACCC 132179 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA----CTG-G 50125 |||||||||||||| || || || ||||| || | || | || |||| | | | Sbjct 132178 GAAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCG 132119 Query 50126 CGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184 ||| ||| | | |||||| |||||| ||||||||| | || || || || ||| Sbjct 132118 CGCGAGTC--GCA-CCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTT 132062 Query 50185 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 50244 || |||||| | | | || || || | ||||| | || || || |||||| Sbjct 132061 TCGATGGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAA 132002 Query 50245 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 50304 || |||| ||| || ||||||||||||||||| ||||| |||||||| || || | Sbjct 132001 AGCGAGTACACTTCGGAGTGAATGTTTTCAATGGCGATCTGGAATCCGTAAAAGCAGCGC 131942 Query 50305 GCCTCGGTAATCTGCACTTCTGTAC-AAAATCGTTCAGCTAAATTTTCATTCACTATTCC 50363 ||||| | | |||||||| ||| |||| || || | ||||| ||||| || || Sbjct 131941 GCCTCAGGCACTTGCACTTCACTACTGAAATTCATC-GCAAGGTTTTCGTTCACAATCCC 131883 Query 50364 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG 50423 || ||||| ||||| |||||||| || || || || || ||||||| || | Sbjct 131882 ATCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCAT 131823 Query 50424 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 50483 || ||| || || | || | | ||| | |||||| | |||||||| || Sbjct 131822 CTTGACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGC 131763 Query 50484 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 || ||||| || ||||| ||| | || | | |||||||||||| | ||||||| Sbjct 131762 TTCAGCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCG 131703 Query 50544 ATTTGGATT 50552 |||||| || Sbjct 131702 ATTTGGGTT 131694 >seq17 Length=584494 Score = 161 bits (178), Expect = 1e-34 Identities = 876/1383 (63%), Gaps = 37/1383 (3%) Strand=Plus/Plus Query 79109 ATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTG 79168 |||| || | ||||||||||| ||||| || |||||||| || ||||||||||| || | Sbjct 103327 ATGGCTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGCG 103386 Query 79169 CCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAAT 79228 ||| ||| | || | | ||| | | || || | |||| | | |||||| Sbjct 103387 CCAACAACAGGGAGTTGCGCACACCATGTTTAGCGACTTGAGCTTTCAATGCAGCCCAAT 103446 Query 79229 CCCAAAGATCAGACG--GGACA-ACATTCCAAAGATCATATTGTAGAATACCGTTACTAG 79285 |||| ||| |||| | ||| ||| ||| | |||| | || | || || || || Sbjct 103447 CCCAGAGACCAGATGTTGGAGTGACACCCCACATATCAAACTGGAAGATGCCCTTGCTCA 103506 Query 79286 CGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCT 79345 | || || ||| |||||||| || || | || | || | ||| | || | Sbjct 103507 CAGGGGAGCCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATAGATGCTT 103566 Query 79346 CTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGC 79405 | | ||||| || || | ||||| ||||| | ||| || | ||| | |||| | Sbjct 103567 CCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGCTCAC 103626 Query 79406 TATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGA 79465 | || || || | | |||||||||||| || || || ||||| ||||||||||| | Sbjct 103627 TTTCGAAGGGGAACCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCA 103686 Query 79466 TAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 79525 ||| | ||||| |||||| | |||||||| || ||||| || || ||||| | Sbjct 103687 CAGGGCGATGTCGTAGATTAGATCGCTTGGCTTCTGGGATCGGATAGTAGTTGATATCAA 103746 Query 79526 TAATTTTATTGAGATTCCTG---ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAAT 79582 | | || || ||||| ||| || || ||| | | || | || || |||| | Sbjct 103747 TGACCTTGTTCAGATTTCTGGTCACAAT--CTTCGTG-ATTTCGTAGAGCTTCTGAAAGT 103803 Query 79583 CAAATCGTCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTA 79642 ||| |||| ||||| || || || | || |||| || || || || | Sbjct 103804 TAAACACACCATTGTCGACAAATTTGGACAGTGCAATGGACGCCAAGTTGCACACCGCGA 103863 Query 79643 CCTCAT--TAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGT 79700 | || | | | || | || | | | ||| ||| | |||||| | ||| || Sbjct 103864 CTTCGTCCTTGGATGTG--TACTCGACGACCTCACAGCACAAGTTACTGGAGCGAATAGT 103921 Query 79701 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGT 79760 || || ||||| ||||| ||| || || |||||||| || || ||| | || || Sbjct 103922 GCCCAAGTTTTGCTGATTCGACTTGCGATTGCATGCATCCTTGTAGAGCATGTAGGGTGT 103981 Query 79761 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA 79820 || ||||| ||||||| || | ||| || ||| | | | ||||| || | Sbjct 103982 GCCGGTTTCGATCTGAGCGTCCAAAATGGCGAACCACAATTGTTGCGCCTTGATGGT--- 104038 Query 79821 CTTGT------ATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCC 79874 |||| | | || || ||||| | || || || ||||| || || || Sbjct 104039 CTTGCGGGCCAAGCCCTGGGCT---TCGTACTTGGTGTACAAGGCCTCGAATTCATCACC 104095 Query 79875 CCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC--CACTCTCCATCA 79932 ||| ||| | |||| ||| | ||| || | || ||| ||||| || | Sbjct 104096 CCAGCAGTCGAACAGACCAGTCGCTTCATTAGGGCAGA--AAAGACTCCACTCGCCGTTG 104153 Query 79933 TCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 79992 | | || || ||||| || | ||| || ||||| | || ||| ||||| | | Sbjct 104154 GCTTCCACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAAACAGATCACGTGCA 104213 Query 79993 CTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 80052 | ||| || || || |||||| | | ||| |||||| | | | || | |||| Sbjct 104214 CGATGAAGTTCATTACCGTGATTCTTCCTCAAATCCAGGAACTCAAATACGTCGGCATGC 104273 Query 80053 CACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTAT 80112 ||||| ||||| || || || | ||| || ||| || || ||||| | ||| Sbjct 104274 CACGGCTCCAAATAGATTGCAAACGACCCCTTGCGCTTGCCACCACCTTGATCAACGTAA 104333 Query 80113 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTC 80172 | ||| |||| ||| | || | |||||| || | |||||| ||||| || ||||| || Sbjct 104334 CGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGACGTGCCATTTGTA 104393 Query 80173 CCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT--TGATAGACCTATTCCCCCTG 80230 || ||| ||||| | || ||||| || || |||| || || ||||||| Sbjct 104394 CCACGGATGTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGATG--CCGATACCCCCTG 104451 Query 80231 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCAT 80290 || || ||||| |||||||| | || | || || || |||||||| || ||| | Sbjct 104452 CCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCAATAGAATCGT 104511 Query 80291 CAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 80350 | |||| | || ||||| ||||| ||| | || || || || ||||| | Sbjct 104512 CTTGCATGGCCAATAAGAAACACGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAACA 104571 Query 80351 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAAT-AGC 80408 || || | |||||||| || | |||| ||| | |||||||||| | | Sbjct 104572 GTGTTGGTGTGGCGTGCGTGAAGAACGAGAGCGACATGTAC-TCATACGTCTCAAGCACC 104630 Query 80409 TGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCT 80468 | || ||||| || ||| || ||||| ||||||||||| | ||| ||||| |||| Sbjct 104631 AGCTTG-ATATCTTCTTTATGGATGCCTACAGCGACACGCATGATCATTTGCTGCGGTCG 104689 Query 80469 TTC 80471 ||| Sbjct 104690 TTC 104692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266286059200