Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq22 100 2e-16 seq27 91.5 1e-13 >seq22 Length=480975 Score = 100 bits (110), Expect = 2e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || ||||| | | |||||| || | || ||||| || | ||| || ||| | Sbjct 154229 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 154288 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| |||| |||| || || || ||||||||||| ||||||||||| | || Sbjct 154289 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 154348 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || ||| ||| || || || || | | | |||| | ||||| Sbjct 154349 ATACCTTCCTTATC-CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGAC 154407 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 ||| | ||| || || || ||||| || || ||||| || || |||||| |||| Sbjct 154408 GTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCATTGTCTT 154461 Score = 100 bits (110), Expect = 2e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || ||||| | | |||||| || | || ||||| || | ||| || ||| | Sbjct 171651 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 171592 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| |||| |||| || || || ||||||||||| ||||||||||| | || Sbjct 171591 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 171532 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || ||| ||| || || || || | | | |||| | ||||| Sbjct 171531 ATACCTTCCTTATC-CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGAC 171473 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 ||| | ||| || || || ||||| || || ||||| || || |||||| |||| Sbjct 171472 GTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCATTGTCTT 171419 >seq27 Length=441917 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | |||||||| |||| ||||||||||| || | ||||| || ||| Sbjct 63539 CCACCACGCAGACGCAACACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 63598 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATC 42995 | || || |||| |||||||| ||||| ||||| |||| ||||| ||||| Sbjct 63599 AGCGTGCGGCCGTCTTCCAATTGCTTGCCAGCAAAGATCAGACGCTGCTGATC 63651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381368298576240