Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 212 8e-50 seq17 131 2e-25 >seq2 Length=1145976 Score = 212 bits (234), Expect = 8e-50 Identities = 415/606 (68%), Gaps = 7/606 (1%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||||||| || || || || ||||||| || ||||| | ||| || | ||| || || | Sbjct 132297 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 132238 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | |||| || ||||| || |||||||| || | ||| || || || ||| || || || Sbjct 132237 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGA-GCAGAAGGAACCC 132179 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 |||||||||||||| || || |||||||| || | || | || |||| | ||| | Sbjct 132178 GAAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCG 132119 Query 42236 T-CATGTATC--CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | || | ||||| |||||| ||||||||| | || || || || ||||| Sbjct 132118 CGCGAGTCGCACCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCG 132059 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 |||||| | | | || || || | ||||| | ||||| || |||||||| Sbjct 132058 ATGGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAAGC 131999 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 |||| ||| || ||||||||||||||||| ||||| |||||||| || || | ||| Sbjct 131998 GAGTACACTTCGGAGTGAATGTTTTCAATGGCGATCTGGAATCCGTAAAAGCAGCGCGCC 131939 Query 42413 TCGGTAACCTGTACTTCTGTAC-AAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTC 42471 || | || || ||||| ||| |||| || || | ||||||||||| || || || Sbjct 131938 TCAGGCACTTGCACTTCACTACTGAAATTCATC-GCAAGGTTTTCGTTCACAATCCCATC 131880 Query 42472 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTT 42531 ||||| ||||| |||||||| || || || || || | ||||| || | || Sbjct 131879 GCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCATCTT 131820 Query 42532 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTC 42591 ||| || || | || | | ||| | |||||| | |||||||| ||||| Sbjct 131819 GACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTC 131760 Query 42592 TGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATT 42651 ||||| || ||||| ||| | || | | ||| |||||||| | ||||||| ||| Sbjct 131759 AGCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCGATT 131700 Query 42652 TGGATT 42657 ||| || Sbjct 131699 TGGGTT 131694 >seq17 Length=584494 Score = 131 bits (144), Expect = 2e-25 Identities = 723/1138 (64%), Gaps = 34/1138 (3%) Strand=Plus/Plus Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 |||||||| || | ||||| ||||| | ||| || | ||| | |||| | || || Sbjct 103572 GCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGCTCACTTTCG 103631 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || || | | |||||||||||| || || || ||||| || |||||||| | ||| Sbjct 103632 AAGGGGAACCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGG 103691 Query 71554 CTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 71613 | |||| |||||| | |||||||| || ||||| || || ||||| || | Sbjct 103692 CGATGTCGTAGATTAGATCGCTTGGCTTCTGGGATCGGATAGTAGTTGATATCAATGACC 103751 Query 71614 TTATTGAGATTTCTG---ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAAT 71670 || || ||||||||| || || ||| | | || | || || |||| | ||| Sbjct 103752 TTGTTCAGATTTCTGGTCACAAT--CTTCGTG-ATTTCGTAGAGCTTCTGAAAGTTAAAC 103808 Query 71671 CTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCA 71730 |||| ||||| | || |||| || |||| || || || || || || Sbjct 103809 ACACCATTGTCGACAAATTTGGACAGTGCAATGGACGCCAAGTTGCACACCGCGACTTCG 103868 Query 71731 T--TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 71788 | | | || | || | | | ||| ||| | ||||| | || || || | Sbjct 103869 TCCTTGGATGTG--TACTCGACGACCTCACAGCACAAGTTACTGGAGCGAATAGTGCCCA 103926 Query 71789 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAG 71848 | ||||| ||||| ||| || || |||||||| || || || | || || || | Sbjct 103927 AGTTTTGCTGATTCGACTTGCGATTGCATGCATCCTTGTAGAGCATGTAGGGTGTGCCGG 103986 Query 71849 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGT 71908 |||| ||||||| || | ||| || ||| | | | ||||| || | || | Sbjct 103987 TTTCGATCTGAGCGTCCAAAATGGCGAACCACAATTGTTGCGCCTTGATGGTCTTGCGGG 104046 Query 71909 ---ATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCAT 71965 | | || || ||||| | || || || ||||| || || ||||| ||| Sbjct 104047 CCAAGCCCTGGGCT---TCGTACTTGGTGTACAAGGCCTCGAATTCATCACCCCA-GCA- 104101 Query 71966 TGTCTAAT---CCAGGACATTCATTCGGACACATCAATGAC--CACTCTCCATCATCATT 72020 ||| || |||| |||||| || || | || ||| ||||| || | | | Sbjct 104102 -GTCGAACAGACCAGTCGCTTCATTAGGGCAGA--AAAGACTCCACTCGCCGTTGGCTTC 104158 Query 72021 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 72080 || || ||||| || | ||| || ||||| | || ||| ||||| | | | ||| Sbjct 104159 CACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAAACAGATCACGTGCACGATG 104218 Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 || || || |||||| | | ||| |||||| | | | || | ||||||||| Sbjct 104219 AAGTTCATTACCGTGATTCTTCCTCAAATCCAGGAACTCAAATACGTCGGCATGCCACGG 104278 Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 72200 ||||| || || || | ||| || ||| || || ||||| | ||| | ||| Sbjct 104279 CTCCAAATAGATTGCAAACGACCCCTTGCGCTTGCCACCACCTTGATCAACGTAACGAGC 104338 Query 72201 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 72260 |||| ||| | || | |||||| || | |||||| ||||| | ||||| || || Sbjct 104339 AGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGACGTGCCATTTGTACCACG 104398 Query 72261 GATATAGCTTCCACTGGCACGAATATTGCTAAT--TGATAGACCTATTCCCCCTGCCATT 72318 ||| ||||| | || ||||| ||| || |||| || || ||||||||| Sbjct 104399 GATGTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGATG--CCGATACCCCCTGCCCAC 104456 Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378 || ||||| |||||||| | || | || || || |||||||| ||| ||| || | Sbjct 104457 TTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCAATAGAATCGTCTTGC 104516 Query 72379 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438 ||| | || ||||| ||||| ||| | || || || || ||||| | || Sbjct 104517 ATGGCCAATAAGAAACACGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAACAGTGTT 104576 Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAAT-AGCTGATT 72496 || | |||||||| || | |||| ||| | |||||||||| | | | || Sbjct 104577 GGTGTGGCGTGCGTGAAGAACGAGAGCGACATGTAC-TCATACGTCTCAAGCACCAGCTT 104635 Query 72497 CTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 ||||| || ||| || ||||| ||||||||||| | ||| ||||| |||| ||| Sbjct 104636 G-ATATCTTCTTTATGGATGCCTACAGCGACACGCATGATCATTTGCTGCGGTCGTTC 104692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136851012800