Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 113 7e-20 seq17 95.1 2e-14 >seq2 Length=1145976 Score = 113 bits (124), Expect = 7e-20 Identities = 555/860 (65%), Gaps = 64/860 (7%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 |||| |||||||| |||||| | || |||||||| | ||||| | ||| || Sbjct 131739 TGGGCCATGTACAAGAAGGCTGAAGCGAGTTTTTGGACCGCTGAAGAACTGGATTTGGTG 131798 Query 125082 AAGGACCTGTACGATTGGG---AGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 | |||||| | || |||| ||| |||| || | || || || || | Sbjct 131799 CATGACCTGAAGGACTGGGTCAAGA------TGACCGACAACGAACGCTTCTTCATCAAG 131852 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | ||||| |||||||| | | |||||| || || ||||| || || || | || Sbjct 131853 CACGTCTTGGCGTTCTTTGCTGCCAGCGATGGGATTGTGAACGAAAACCT--TGCGATGA 131910 Query 125199 TTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 | || || | | || | || |||| | ||||||||||||||||| ||| | Sbjct 131911 ATTTCAGTAGTGAAGTGCAAGTGCCTGAGGCGCGCTGCTTTTACGGATTCCAGATCGCCA 131970 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGC 125316 |||| ||| | ||||| ||| ||||||| ||||||||| ||||| || ||| Sbjct 131971 TTGAAAACATTCACTCCGAAGTGTACTCGCTTTTGATTGACACATACATCAAAGACCCG- 132029 Query 125317 AACGTAAA----CACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGT----AA 125368 | || || ||| |||| | || ||||| || | || || ||| || Sbjct 132030 ACCGAGAAGGACCACTTGCTACGT---GCCATCGAAACCATCCC----ATGCGTGACCAA 132082 Query 125369 AAAGGCTCAATGGGTGATTCG-GTGGATCGA-TGACGACAAGTCTTCGTACGCCGACAGA 125426 ||||| || | || ||| |||| ||| | || | || | || || || | Sbjct 132083 GAAGGC-CAGTTGGGCATTGAAGTGGTGCGACTCGCGCGCTG-CTGCCTATGCTGAACGG 132140 Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTT 125485 | ||||||| || || || ||||| ||||||||||||||| || ||| ||||||| Sbjct 132141 ATTTTGGCATTTGCGGCTGTCGAGGGAATCTTCTTTTCGGGTTCCTTCTGCT-CCATCTT 132199 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 ||| | |||||||| || |||||||| || || | | || || | || ||| Sbjct 132200 CTGGTTGAAGAAGCGTGGGCTCATGCCTGGTCTCAGTTTCTCGAATGAACTCATCAGTCG 132259 Query 125546 AGACGAGGGCCTACACTGTGACTTTGC---CAT--TCTACTGTT---TCG-CAACTATCT 125596 || || || | |||||||||||||| | | | |||| ||| |||| | || Sbjct 132260 TGATGAAGGGTTGCACTGTGACTTTGCGTGCTTGATGTACTCCAAGCTCGTCAACAAGCT 132319 Query 125597 GCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAG 125656 ||| |||| | | || | |||| |||| | || || ||||| | Sbjct 132320 ---TCCGGAGTCACG--CGTGC-ACGAAA---TCAT-----TGGTGAC----GCCGTCAC 132361 Query 125657 GATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAA 125716 ||| || | || || | | || || || || || ||||||||||||||| | Sbjct 132362 GATTGAGAAGGAATTCGTCAAGGATTCGCTCCCTGTGGAATTGATTGGCATGAACTCGAC 132421 Query 125717 GCTAATGTGCGAGTACATAGAGTT-TGTGGCAGATCGTCTACTGTACGAGTTGATTGGCC 125775 ||| ||||| ||||||| || || |||| | |||||| | || | | | | || Sbjct 132422 GCTGATGTGTCAGTACATTGAATTCTGTG-CTGATCGTTTGCTACATGCGCTTGGTGTAT 132480 Query 125776 GCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTA 125835 |||||| |||||||||||||| || ||||| | ||| || || ||||| |||| | Sbjct 132481 CCAAGATCTACAACGCCAAGAACCCTTTTGACTGGATGGACATGATCTCACTGCAGGGCA 132540 Query 125836 AGACCAACTTTTTCGAGAAG 125855 ||||||| || || |||||| Sbjct 132541 AGACCAATTTCTTTGAGAAG 132560 >seq17 Length=584494 Score = 95.1 bits (104), Expect = 2e-14 Identities = 247/374 (66%), Gaps = 2/374 (1%) Strand=Plus/Minus Query 96910 TCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTG 96969 |||| ||||| || ||||| || ||||| ||||| || | || || | || || | Sbjct 104289 TCTATTTGGAGCCGTGGCATGCCGACGTATTTGAGTTCCTGGATTTGAGGAAGAATCACG 104230 Query 96970 GCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCA 97029 | |||| || || | || ||||||| || | ||| | ||||||||||||| Sbjct 104229 GTAATGAACTTCATCGTGCACGTGATCTGTTTTACGCCATGTGGATCCCAGATTTGTTCA 104170 Query 97030 TGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTC 97089 ||||||| || | | | ||| | ||||| || | ||||| | | | |||| Sbjct 104169 TGAAGCGTGTGGAAGCCAACGGCGAGTGGAGTCTTTTCTGCCCTAATGAAGCGACTGGTC 104110 Query 97090 TGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC 97149 ||| ||| |||||||| || || || |||||| |||||| ||||| ||||| Sbjct 104109 TGTTCGACTGCTGGGGTGATGAATTCGAGGCCTTGTACACCAAGTACGAAGCCCAGGGCT 104050 Query 97150 -GATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTA 97208 | || |||| | || | || | | || ||||| ||||| || |||||| | Sbjct 104049 TGGCCCGCAAGACCA-TCAAGGCGCAACAATTGTGGTTCGCCATTTTGGACGCTCAGATC 103991 Query 97209 GAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGC 97268 || || || || || ||||| |||||||||||| | |||||||| || || | Sbjct 103990 GAAACCGGCACACCCTACATGCTCTACAAGGATGCATGCAATCGCAAGTCGAATCAGCAA 103931 Query 97269 CACTTGGGCACCAT 97282 |||||||||| || Sbjct 103930 AACTTGGGCACTAT 103917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056606292800