Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq22 95.1 8e-15 seq78 84.2 1e-11 >seq22 Length=480975 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| |||||||||||||| || || || ||||| || ||| || | Sbjct 154013 CGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCA 154072 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||||||| ||| || | ||||||||| || | || |||||||| || Sbjct 154073 TCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTG 154132 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||||| || | | |||| |||| |||| ||||||| || || Sbjct 154133 TCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATG 154192 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| | || || || || || ||||| Sbjct 154193 GTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 154227 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| |||||||||||||| || || || ||||| || ||| || | Sbjct 171867 CGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCA 171808 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||||||| ||| || | ||||||||| || | || |||||||| || Sbjct 171807 TCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTG 171748 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||||| || | | |||| |||| |||| ||||||| || || Sbjct 171747 TCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATG 171688 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| | || || || || || ||||| Sbjct 171687 GTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 171653 Score = 91.5 bits (100), Expect = 9e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | || | |||||| ||||||||||| || || || ||||| || || Sbjct 154228 ACCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCT 154287 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 |||| | | ||| |||| ||||||||| ||| || ||||| || || || | || Sbjct 154288 CAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGG 154347 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || |||| ||| || || | | |||| |||| |||| || Sbjct 154348 AATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGAC 154407 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || || || || || || || || ||||| || ||||| Sbjct 154408 GTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCAT 154455 Score = 91.5 bits (100), Expect = 9e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | || | |||||| ||||||||||| || || || ||||| || || Sbjct 171652 ACCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCT 171593 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 |||| | | ||| |||| ||||||||| ||| || ||||| || || || | || Sbjct 171592 CAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGG 171533 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || |||| ||| || || | | |||| |||| |||| || Sbjct 171532 AATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGAC 171473 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || || || || || || || || ||||| || ||||| Sbjct 171472 GTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCAT 171425 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| ||||||||||| || ||||| |||||||||||| |||| | | ||| || Sbjct 153562 CACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTC 153621 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 || ||||| || ||| || | |||||| || || | || || ||||| || || Sbjct 153622 CAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTG 153681 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 ||| ||| || || | | ||| | ||| |||| || |||| ||| || || || Sbjct 153682 GATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTT 153741 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | || || ||||| || ||||| Sbjct 153742 GCCAGTCAACGTCTTCACGAAGATCTGCAT 153771 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| ||||||||||| || ||||| |||||||||||| |||| | | ||| || Sbjct 172090 CACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTC 172031 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 || ||||| || ||| || | |||||| || || | || || ||||| || || Sbjct 172030 CAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTG 171971 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 ||| ||| || || | | ||| | ||| |||| || |||| ||| || || || Sbjct 171970 GATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTT 171911 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | || || ||||| || ||||| Sbjct 171910 GCCAGTCAACGTCTTCACGAAGATCTGCAT 171881 >seq78 Length=145407 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 33182 TTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATT 33241 ||||| || ||||| || || | || | || ||||||||||| ||| ||| || Sbjct 113023 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 113082 Query 33242 AAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGA 33301 | ||||||||| || | || || ||||| || || ||| || || || | | | Sbjct 113083 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCA 113142 Query 33302 ATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAA 33361 || |||| |||| |||||||| || || || || |||||||||||||| ||||| Sbjct 113143 ATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGAAG 113202 Query 33362 ATTTGCATGTT 33372 || ||||| || Sbjct 113203 ATCTGCATCTT 113213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318776512171440