Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq22 154 3e-32 seq2 113 1e-19 >seq22 Length=480975 Score = 154 bits (170), Expect = 3e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||| || | || ||||| ||||| ||||||||||||||||| Sbjct 154226 ATACCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCG 154285 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||| | ||||||||| || || |||||||||||||| | | ||||||||||||| Sbjct 154286 CTCAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGA 154345 Query 104450 GGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||||| |||||||||||||| ||| || || || || | | ||| ||||| Sbjct 154346 GGAATACCTTCCTTATCCTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCGGACGGTTC 154404 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | || || ||||| || || ||||| || || || ||||||||| Sbjct 154405 GACGTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCATT 154456 Score = 154 bits (170), Expect = 3e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||| || | || ||||| ||||| ||||||||||||||||| Sbjct 171654 ATACCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCG 171595 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||| | ||||||||| || || |||||||||||||| | | ||||||||||||| Sbjct 171594 CTCAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGA 171535 Query 104450 GGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||||| |||||||||||||| ||| || || || || | | ||| ||||| Sbjct 171534 GGAATACCTTCCTTATCCTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCGGACGGTTC 171476 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | || || ||||| || || ||||| || || || ||||||||| Sbjct 171475 GACGTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCATT 171424 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || ||||| || || |||||||| || ||||| | || | ||| || || || || Sbjct 154025 TGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGC 154084 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||||||||| || || | || ||||| ||||| || ||||| || || ||||||||| Sbjct 154085 TTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTT 154144 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||| ||||| || | | ||| ||||| || || | ||| || ||||| || || Sbjct 154145 TGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATGGTCTTCCCCGTT 154204 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | ||| || ||||| |||||||| Sbjct 154205 AATGTCTTCACAAAGATCTGCAT 154227 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || ||||| || || |||||||| || ||||| | || | ||| || || || || Sbjct 171855 TGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGC 171796 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||||||||| || || | || ||||| ||||| || ||||| || || ||||||||| Sbjct 171795 TTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTT 171736 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||| ||||| || | | ||| ||||| || || | ||| || ||||| || || Sbjct 171735 TGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATGGTCTTCCCCGTT 171676 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | ||| || ||||| |||||||| Sbjct 171675 AATGTCTTCACAAAGATCTGCAT 171653 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || |||||||| | || | ||| ||||| | || |||||| Sbjct 153803 GTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCTTCCAACTGCTTTCCA 153862 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | ||||||||||||||| || ||||| ||||| || || ||| || Sbjct 153863 GCGAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCTTGGATTTTTTGCTTC 153922 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | | || || || || || | ||||| || || || || | || Sbjct 153923 ACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTTTTCCCCGTCAACGTC 153982 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 153983 TTCACAAAGATCTGCAT 153999 >seq2 Length=1145976 Score = 113 bits (124), Expect = 1e-19 Identities = 292/442 (66%), Gaps = 16/442 (4%) Strand=Plus/Plus Query 268855 TCTTG-CGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913 ||||| |||| ||||| | || ||||| || || |||||||| || | ||| ||| Sbjct 131857 TCTTGGCGTTCTTTGCTGCCAGCGATGGGATTGTGAACGAAAACCTTGCGATGAATTTCA 131916 Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973 || || || || | ||||| || | || ||||||||||||||||| || || |||| Sbjct 131917 GTAGTGAAGTGCAAGTGCCTGAGGCGCGCTGCTTTTACGGATTCCAGATCGCCATTGAAA 131976 Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAA 269033 | ||||| || || ||||| || || || || || || || | || | ||| | Sbjct 131977 ACATTCACTCCGAAGTGTACTCGCTTTTGATTGACACATACATCAAAGACCCGACCGAGA 132036 Query 269034 AGAAAAGACTATTTTCTTCT----ATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAA 269089 || ||| | || || | || ||| || || |||| || || | Sbjct 132037 AG----GACCACTTGCTACGTGCCATCGAAACCATCCCATGCGTGACCAAGAAGGCCAGT 132092 Query 269090 TGGGCTCTGAAATGGATAAACGATAGCGCGC-----CTTACGGAGAAAGGTTAGTTGCTT 269144 ||||| |||| ||| || | |||||| | || | ||| || | | || | Sbjct 132093 TGGGCATTGAAGTGGTGCGAC--TCGCGCGCTGCTGCCTATGCTGAACGGATTTTGGCAT 132150 Query 269145 TTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGA 269204 |||| ||||| || || || ||||||||||| || || | | ||||| |||||||||| Sbjct 132151 TTGCGGCTGTCGAGGGAATCTTCTTTTCGGGTTCCTTCTGCTCCATCTTCTGGTTGAAGA 132210 Query 269205 AAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTT 269264 | | || || ||||| || | | |||||| || ||| | || || | || ||||| | Sbjct 132211 AGCGTGGGCTCATGCCTGGTCTCAGTTTCTCGAATGAACTCATCAGTCGTGATGAAGGGT 132270 Query 269265 TACACTGCGACTTCGCTTGTTT 269286 | ||||| ||||| || || || Sbjct 132271 TGCACTGTGACTTTGCGTGCTT 132292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151394269358240