Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq47 206 4e-49 seq18 203 5e-48 seq123 161 2e-35 seq69 161 2e-35 >seq47 Length=302490 Score = 206 bits (228), Expect = 4e-49 Identities = 208/268 (78%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||| || || ||||| || ||||||||||| |||||||||||||| || Sbjct 202438 GCTAAGCGTCATCGCAAGGTC-CTTCGTGACAACATCCAAGGTATCACCAAGCCAGCCAT 202496 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| |||||||||||||| ||||||||| ||||||| ||| |||| ||||| | Sbjct 202497 CCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGCTTGATCTACGAAGAAAC 202556 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| | | ||| || | ||| | || || || || Sbjct 202557 ACGTGGTGTCCTCAAGGTCTTCCTTGAAAACGTCATTCGTGACTCGGTCACGTACACGGA 202616 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || |||||||||||| |||||||| ||||||| || | || || || || Sbjct 202617 GCACGCGCGCCGAAAGACTGTCACCGCCATGGATGTCGTCTACGCGCTCAAGCGCCAGGG 202676 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 202677 CCGCACCCTCTACGGTTTCGGTGGTTAA 202704 >seq18 Length=572916 Score = 203 bits (224), Expect = 5e-48 Identities = 205/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| ||||| || ||||||||||| |||||||||||||| ||| Sbjct 517026 GCCAAGCGTCATCGCAAGGTGCTTCGTGACAACATCCAAGGTATCACCAAGCCAGCCATC 517085 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||| ||||||||| |||| || ||| |||| ||||| | Sbjct 517086 CGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCCGGCTTGATCTACGAAGAAACC 517145 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| ||||||| | | |||||||| ||| || || ||| || ||| Sbjct 517146 CGTGGTGTGCTCAAGGTCTTCCTTGAAAACGTTATCCGTGACTCTGTCACCTACACGGAG 517205 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| ||||| |||||||| ||||||| || | || || || ||| Sbjct 517206 CACGCGCGCCGAAAGACCGTCACTGCCATGGATGTCGTCTACGCGCTCAAGCGCCAGGGC 517265 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | |||| || || || ||||| Sbjct 517266 CGCACCCTTTACGGCTTCGGCGGTTAA 517292 >seq123 Length=19059 Score = 161 bits (178), Expect = 2e-35 Identities = 194/261 (74%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | | || || || |||||||| || |||||||||||||| || Sbjct 6758 GCCAAGCGCCATCGCA-AGGTGTTGCGTGACAACATCCAGGGGATCACCAAGCCAGCGAT 6816 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| ||||| ||||||||||| || |||||| || |||| || |||| ||||| | Sbjct 6817 TCGTCGACTGGCGCGTCGTGGTGGTGTAAAGCGTATCAGTGGACTGATCTACGAAGAAAC 6876 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| |||||| | || || ||| || || | |||| | | || || || Sbjct 6877 GCGTGGTGTGTTGAAGGTGTTTCTGGAGAATGTGATTCGTGATTCGGTGACGTACACGGA 6936 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || ||||| || || | |||||| | |||||||| ||||| |||||||| Sbjct 6937 GCATGCACGTCGAAAGACGGTGACGGCGATGGATGTAGTCTATGCGTTGAAGCGTCAAGG 6996 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | ||||||| ||||| Sbjct 6997 TCGCACGCTTTATGGCTTTGG 7017 Score = 161 bits (178), Expect = 2e-35 Identities = 194/261 (74%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | | || || || |||||||| || |||||||||||||| || Sbjct 10640 GCCAAGCGCCATCGCA-AGGTGTTGCGTGACAACATCCAGGGGATCACCAAGCCAGCGAT 10582 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| ||||| ||||||||||| || |||||| || |||| || |||| ||||| | Sbjct 10581 TCGTCGACTGGCGCGTCGTGGTGGTGTAAAGCGTATCAGTGGACTGATCTACGAAGAAAC 10522 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| |||||| | || || ||| || || | |||| | | || || || Sbjct 10521 GCGTGGTGTGTTGAAGGTGTTTCTGGAGAATGTGATTCGTGATTCGGTGACGTACACGGA 10462 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || ||||| || || | |||||| | |||||||| ||||| |||||||| Sbjct 10461 GCATGCACGTCGAAAGACGGTGACGGCGATGGATGTAGTCTATGCGTTGAAGCGTCAAGG 10402 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | ||||||| ||||| Sbjct 10401 TCGCACGCTTTATGGCTTTGG 10381 >seq69 Length=216118 Score = 161 bits (178), Expect = 2e-35 Identities = 194/261 (74%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | | || || || |||||||| || |||||||||||||| || Sbjct 456 GCCAAGCGCCATCGCA-AGGTGTTGCGTGACAACATCCAGGGGATCACCAAGCCAGCGAT 398 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| ||||| ||||||||||| || |||||| || |||| || |||| ||||| | Sbjct 397 TCGTCGACTGGCGCGTCGTGGTGGTGTAAAGCGTATCAGTGGACTGATCTACGAAGAAAC 338 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| |||||| | || || ||| || || | |||| | | || || || Sbjct 337 GCGTGGTGTGTTGAAGGTGTTTCTGGAGAATGTGATTCGTGATTCGGTGACGTACACGGA 278 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || ||||| || || | |||||| | |||||||| ||||| |||||||| Sbjct 277 GCATGCACGTCGAAAGACGGTGACGGCGATGGATGTAGTCTATGCGTTGAAGCGTCAAGG 218 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | ||||||| ||||| Sbjct 217 TCGCACGCTTTATGGCTTTGG 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074943994040