Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 205 1e-47 seq17 134 2e-26 >seq2 Length=1145976 Score = 205 bits (226), Expect = 1e-47 Identities = 414/609 (68%), Gaps = 13/609 (2%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||||||| || || || || ||||||| || || || | ||| || ||||| || || | Sbjct 132297 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 132238 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | |||| || ||||| || |||||||| || | ||| || ||||| ||| || || | Sbjct 132237 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCG 132178 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGC 33472 ||||||||||||| || || || ||||| || | || | || |||| | | |||| Sbjct 132177 AAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGC 132118 Query 33473 ---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33529 ||| | | |||||| |||||| ||||||||| | || || || || |||| Sbjct 132117 GCGAGTC--GCA-CCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTT 132061 Query 33530 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33589 | |||||| | | | || || || | ||||| | || || || ||||||| Sbjct 132060 CGATGGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAA 132001 Query 33590 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33649 | |||| ||| || ||||||||||||||||| ||||| |||||||| || || | | Sbjct 132000 GCGAGTACACTTCGGAGTGAATGTTTTCAATGGCGATCTGGAATCCGTAAAAGCAGCGCG 131941 Query 33650 CCTCGGTAATCTGTACTTCTGTAC--AAAATCGTTCCGCCAAATTTTCATTCACTATTCC 33707 |||| | | || ||||| ||| ||| || | ||| | ||||| ||||| || || Sbjct 131940 CCTCAGGCACTTGCACTTCACTACTGAAATTCAT--CGCAAGGTTTTCGTTCACAATCCC 131883 Query 33708 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 33767 || ||||| ||||| |||||||| || || || || || | ||||| || | Sbjct 131882 ATCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCAT 131823 Query 33768 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827 || ||| || || | || | | ||| | |||||| | |||||||| || Sbjct 131822 CTTGACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGC 131763 Query 33828 CTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887 || ||||| || |||||| ||| | || | |||||||||||| | ||||||| Sbjct 131762 TTCAGCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCG 131703 Query 33888 ATTTGGATT 33896 |||||| || Sbjct 131702 ATTTGGGTT 131694 >seq17 Length=584494 Score = 134 bits (148), Expect = 2e-26 Identities = 676/1062 (64%), Gaps = 30/1062 (3%) Strand=Plus/Plus Query 62702 GAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62761 |||||||||||| || || || ||||| ||||||||||| | ||| | ||||| ||| Sbjct 103646 GAGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGGCGATGTCGTAGATT 103705 Query 62762 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 62821 ||| | |||||||| || ||||| || || ||||| || | || || |||||||| Sbjct 103706 AGATCGCTTGGCTTCTGGGATCGGATAGTAGTTGATATCAATGACCTTGTTCAGATTTCT 103765 Query 62822 G---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTAC 62878 | ||||| ||| | | || | || || |||| | ||| |||| || Sbjct 103766 GGTCACAAT--CTTCG-TGATTTCGTAGAGCTTCTGAAAGTTAAACACACCATTGTCGAC 103822 Query 62879 AAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCA 62936 ||| || || |||| || |||| || || || || || || | | | || | Sbjct 103823 AAATTTGGACAGTGCAATGGACGCCAAGTTGCACACCGCGACTTCGTCCTTGGAT--GTG 103880 Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 || | | | |||| ||| | ||||| | ||||| || || ||||| ||||| Sbjct 103881 TACTCGACGACCTCACAGCACAAGTTACTGGAGCGAATAGTGCCCAAGTTTTGCTGATTC 103940 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 ||| || || |||||||| || || ||| | || || || ||||| ||||||| Sbjct 103941 GACTTGCGATTGCATGCATCCTTGTAGAGCATGTAGGGTGTGCCGGTTTCGATCTGAGCG 104000 Query 63057 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT- 63115 || | ||| || ||| | | | ||||| || | | | || | || Sbjct 104001 TCCAAAATGGCGAACCACAATTGTTGCGCCTTGAT----GGTCTTGCGGGCCAAGCCCTG 104056 Query 63116 ---TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 63172 |||||| || ||||| ||||| || || ||||| | | || |||| Sbjct 104057 GGCTTCGTACTTGGTGTACAAGGCCTCGAATTCATCACCCCAGCAGTCGAACAGACCAGT 104116 Query 63173 ACATTCATCCGGACACATCAACGA--CCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63230 ||||| || || | || || |||||| |||| | | ||| || ||||| || Sbjct 104117 CGCTTCATTAGGGCAGA--AAAGACTCCACTCGCCGTTGGCTTCCACACGCTTCATGAAC 104174 Query 63231 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 63290 | ||| || ||||| | || ||| ||||| | | | ||| || || || | Sbjct 104175 AAATCTGGGATCCACATGGCGTAAAACAGATCACGTGCACGATGAAGTTCATTACCGTGA 104234 Query 63291 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC- 63349 ||||| | | ||| |||||| | | | || | ||||||||| ||||| || || || Sbjct 104235 TTCTTCCTCAAATCCAGGAACTCAAATACGTCGGCATGCCACGGCTCCAAATAGATTGCA 104294 Query 63350 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63409 | || || | || ||| || || ||||| | ||| | ||| |||| ||| | || Sbjct 104295 AACGACCCCTTG-CGCTTGCCACCACCTTGATCAACGTAACGAGCAGTGTCATTGAACAC 104353 Query 63410 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACT 63469 | |||||| || | ||||||||| || | ||||| ||||| ||| ||||| | Sbjct 104354 ACGCAACATAGGCACAATACCGTTGGACGTGCCATTTGTACCACGGATGTAGCTATTCGT 104413 Query 63470 GGCACGAATATTACTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63527 || ||||| || || |||| || || ||||||||| || ||||| ||||| Sbjct 104414 CGCGCGAATGTTGTGCATGCTGAT--GCCGATACCCCCTGCCCACTTGGAGATGCATGCG 104471 Query 63528 CATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63587 ||| | || | ||||| || || ||||| || ||| || |||| | || ||| Sbjct 104472 CATTGCTTGAGAGTGTCGTAAATGCCCTCAATAGAATCGTCTTGCATGGCCAATAAGAAA 104531 Query 63588 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63647 || ||||| ||| | || || || || ||||| | || || | |||||||| Sbjct 104532 CACGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAACAGTGTTGGTGTGGCGTGCGTG 104591 Query 63648 AACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63706 || | || | ||| | |||||||||| | | ||||| || ||| Sbjct 104592 AAGAACGAGAGCGACATGTA-CTCATACGTCTCAAGCACCAGCTTGATATCTTCTTTATG 104650 Query 63707 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 || ||||| ||||||||||| | ||| ||||| |||| ||| Sbjct 104651 GATGCCTACAGCGACACGCATGATCATTTGCTGCGGTCGTTC 104692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945019684800