Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq17 280 4e-70 >seq17 Length=584494 Score = 280 bits (310), Expect = 4e-70 Identities = 1117/1738 (64%), Gaps = 55/1738 (3%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 ||||| |||||||| ||| | |||||||| ||| | || |||||| ||| | | Sbjct 104692 GAACGACCGCAGCAAATGATCATGCGTGTCGCTGTAGGCATCCATAAAGAAGATATCAAG 104633 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAA 363565 | | |||| || ||| || | | || |||| || |||||||||||||| |||| Sbjct 104632 CTGGTGCTTGAGACGTATGAG--TACATGTCGCTCTCGTTCTTCACGCACGCCACACCAA 104575 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTT-CTAAAAATG 363624 || ||| || || || || | ||||| ||||||| || |||||| | ||| Sbjct 104574 CACTGTTTAACGCAGGTACACCACGGCCACAACTGTCTTCGTG-TTTCTTATTGGCCATG 104516 Query 363625 AAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAG 363684 | |||||||| || ||||| || | ||||| || ||| | || || || |||||| Sbjct 104515 CAAGACGATTCTATTGAGGGCATTTACGACACTCTCAAGCAATGCGCATGCATCTCCAAG 104456 Query 363685 AATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGC 363744 ||||| || || || | || ||||| |||| || ||| || ||||| || Sbjct 104455 TGGGCAGGGGGTATCGGCATCAGCATGCACAACATTCGCGCGACGAATAGCTACATCCGT 104396 Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 || ||| || || || || | || || ||| | |||||||| | | ||||| Sbjct 104395 GGTACAAATGGCACGTCCAACGGTATTGTGCCTATGTTGCGTGTGTTCAATGACACTGCT 104336 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 | ||||| || || ||||| || |||||||| ||| ||||||| || ||| | ||||| Sbjct 104335 CGTTACGTTGATCAAGGTGGTGGCAAGCGCAAGGGGTCGTTTGCAATCTATTTGGAGCCG 104276 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAACACGGGAAAAGAGGAATT 363923 |||||||| | |||||||| || || | |||| || ||||| || | | || Sbjct 104275 TGGCATGCCGACGTATTTGAGTTCCTGGATTTGAGGAAGAATCACGGTAA---TGAACTT 104219 Query 363924 --GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG 363981 ||||||||||||||||| || || | ||| | | || || |||||||| ||| Sbjct 104218 CATCGTGCACGTGATCTGTTTTACGCCATGTGGATCCCAGATTTGTTCATGAAGCGTGTG 104159 Query 363982 GAGGC---AGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGAT 364038 || || || || ||| || || ||||| | ||| | ||||| | ||| Sbjct 104158 GAAGCCAACGGCGAG---TGGAGTCTTTTCTGCCCTAATGAAGCGACTGGTCTGTTCGAC 104102 Query 364039 GTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGT 364098 |||||||| || | | || | ||| ||||| ||| | |||| ||| || Sbjct 104101 TGCTGGGGTGATGAATTCGAGGCCTTGTACACCAAGTACGAAGCCCAGGGCTTGGCCCGC 104042 Query 364099 AAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGA 364158 ||||| || || || | | ||||| ||||| |||| | ||||| || || || Sbjct 104041 AAGACCATCAAGGCGCAACAATTGTGGTTCGCCATTTTGGACGCTCAGATCGAAACCGGC 103982 Query 364159 ACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGT 364218 |||||||| ||| | ||||| ||| | ||||| |||||||| || ||||| || | || Sbjct 103981 ACACCCTACATGCTCTACAAGGATGCATGCAATCGCAAGTCGAATCAGCAAAACTTGGGC 103922 Query 364219 ACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACT 364278 || |||| || ||| | || ||| | | || ||||| | ||||| Sbjct 103921 ACTATTCGCTCCAGTAACTTGTGCTGTGAGGTCGTCGAGTACACATCCAAGGACGAAGTC 103862 Query 364279 GCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTGAC 364338 || || || ||| | ||||| || || || | ||||| | ||||| ||| || Sbjct 103861 GCGGTGTGCAACTTGGCGTCCATTGCACTGTCCAAATTTGTCGACAATGGTGTGTTTAAC 103802 Query 364339 CACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGAC 364398 ||| | || || || | || | || || | ||||| ||||||| || || Sbjct 103801 TTTCAGAAGCTCTACGAAATCACGAAGATTGTGACCAGAAATCTGAACAAGGTCATTGAT 103742 Query 364399 AAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGT 364458 | || || ||||| || || |||||| |||| |||||| | || |||||||| | ||| Sbjct 103741 ATCAACTACTATCCGATCCCAGAAGCCAAGCGATCTAATCTACGACATCGCCCTGTGGGT 103682 Query 364459 CTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGA---TTCG 364515 ||||||| || || | ||||| | ||||| | | | | | || || | | Sbjct 103681 ATTGGTGTGCAAGGGTTGGCTGATGCGTTTATTCTCATGGGGTTCCCCTTCGAAAGTGAG 103622 Query 364516 CCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACT 364575 | | || || | | || ||| | || |||||||| |||| | || || ||| Sbjct 103621 C---AAGCGCGAGAATTGAACAAGCACATTTTTGAAACGCTGTACTATGGAGCCATGGAA 103565 Query 364576 GCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTT 364635 || || || | ||||| | || ||| ||||| ||||| |||||| | Sbjct 103564 GCATCTATGGAACTTGCAAAGGAGTATGGCCCGTATGAAACTTACGAGGGCTCCCCTGTG 103505 Query 364636 TCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGC---CATCTGTCCGATGGAAC 364692 |||| | |||||||||||| | ||| |||||| | |||||| | ||| | Sbjct 103504 AGCAAGGGCATCTTCCAGTTTGATATGTGGGGTGTCACTCCAACATCTGGTCTCTGGGAT 103445 Query 364693 TGGGATACGCTACGTTCCAACGTTAAG-----AAGCATGGTACTCGCAACTCCCTCGTTA 364747 ||| ||| | || || | ||| || |||||| ||||||||||| | Sbjct 103444 TGG-----GCTGCATTGAAAGCTCAAGTCGCTAAACATGGTGTGCGCAACTCCCTGTTGT 103390 Query 364748 CAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAAC 364807 ||||||||||| ||||| || ||||| |||||| | || || || || | | | || | Sbjct 103389 TGGCGCCCATGCCAACGGCGTCGACTGCTCAGATCTTGGGCAATAATGAATCCATTGAGC 103330 Query 364808 CGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATA 364867 | || || ||| | || || || || || | || |||||| || | || || | Sbjct 103329 CATTCACGTCCAACATGTACAACCGTCGCGTGCTCGCTGGTGAATTTACGATCGTCAACA 103270 Query 364868 AGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAG-----AA 364922 ||||||| | ||||| || ||| | || | || |||| | ||| | || Sbjct 103269 AGTACCTCATGAAGGAGCTCATCGAACTTGGTATCTG----GACA-CCTGAGGTGCGCAA 103215 Query 364923 CTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTC-CAGGATTTCCAGAAGATCTGA 364981 | | ||| | | ||| || ||||| || | | | || |||| || | | | Sbjct 103214 CCAAATCTTGCATGACGGTGGCTCGGTGCAAAAAGTGCGCTCGA-TTCCTGATGCAATCA 103156 Query 364982 AGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAA--CTC-TCATTGATATGGCGG 365038 || | |||||||| || |||||||| || || || || | | ||| |||| | Sbjct 103155 AGGAAAAGTACAAAACAGTGTGGGAAAT---CAAGCAAAAGGTCGTGTTAGATTTGGCAG 103099 Query 365039 CCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAA 365098 | ||||| ||||| | ||||| || ||||||||| | ||||| ||| | | || | Sbjct 103098 CTGATCGTGGTGCCTACATCTGCCAAAGCCAGTCGCTGAACGTGCACATCGCCGACCCGA 103039 Query 365099 CCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | |||| | ||||| ||||| || |||| |||||| || |||||||| || Sbjct 103038 CGGTGAGCAAGTTGACATCGATGCACTTTTACGCGTGGAAGCGAGGACTTAAGACCGG 102981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303348924218960