Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 187 3e-42 seq17 140 4e-28 >seq2 Length=1145976 Score = 187 bits (206), Expect = 3e-42 Identities = 412/609 (68%), Gaps = 13/609 (2%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||||||| || || || || ||||| | || || || | ||| || | ||| || || | Sbjct 132297 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 132238 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | |||| || ||||| || |||||||| || | ||| || ||||| ||| || || || Sbjct 132237 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGA-GCAGAAGGAACCC 132179 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCG 32828 |||||||| ||||| || || |||||||| || | || | || |||| | | ||| Sbjct 132178 GAAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCG 132119 Query 32829 CT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 32885 | ||| | | |||||| |||||| ||||||||| | || || || || || Sbjct 132118 CGCGAGTC--GCA-CCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTT 132062 Query 32886 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 32945 || || ||| | | | || || || | ||||| | ||||| ||||||||| Sbjct 132061 TCGATGGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAA 132002 Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005 || |||| ||| || ||||||||||||||||| || || |||||||| ||||| | Sbjct 132001 AGCGAGTACACTTCGGAGTGAATGTTTTCAATGGCGATCTGGAATCCGTAAAAGCAGCGC 131942 Query 33006 GCCTCGGTAATCTGTACTTCTGTAC-AAAATCGTTCTGCTAAATTTTCATTCACTATTCC 33064 ||||| | | || ||||| ||| |||| || || | ||||| ||||| || || Sbjct 131941 GCCTCAGGCACTTGCACTTCACTACTGAAATTCATC-GCAAGGTTTTCGTTCACAATCCC 131883 Query 33065 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 33124 || ||||| ||||| |||||||| || || || || || | ||||| || | Sbjct 131882 ATCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCAT 131823 Query 33125 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 33184 || ||| || || | || | | ||||| |||||| | |||||||| || Sbjct 131822 CTTGACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGC 131763 Query 33185 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 33244 || ||||| || ||||| ||| | || | | ||| ||||| || | ||||||| Sbjct 131762 TTCAGCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCG 131703 Query 33245 ATTTGGATT 33253 |||||| || Sbjct 131702 ATTTGGGTT 131694 >seq17 Length=584494 Score = 140 bits (154), Expect = 4e-28 Identities = 714/1123 (64%), Gaps = 34/1123 (3%) Strand=Plus/Plus Query 62498 GTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAG 62557 ||||| || || | ||| || | ||| |||||| | || || || || | | | Sbjct 103587 GTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGCTCACTTTCGAAGGGGAACCCCATG 103646 Query 62558 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62617 ||||||||||| || || || ||||| ||||||||||| | ||| | ||||| |||| Sbjct 103647 AGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGGCGATGTCGTAGATTA 103706 Query 62618 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62677 || | |||||||| || ||||| || || ||||| || | || || ||||||||| Sbjct 103707 GATCGCTTGGCTTCTGGGATCGGATAGTAGTTGATATCAATGACCTTGTTCAGATTTCTG 103766 Query 62678 ---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACA 62734 ||||| ||| | | || | || || |||| | ||| |||| ||| Sbjct 103767 GTCACAAT--CTTCG-TGATTTCGTAGAGCTTCTGAAAGTTAAACACACCATTGTCGACA 103823 Query 62735 AACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCAT 62792 || || || ||||| || |||| || || || || || || | | | || | | Sbjct 103824 AATTTGGACAGTGCAATGGACGCCAAGTTGCACACCGCGACTTCGTCCTTGGAT--GTGT 103881 Query 62793 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 62852 | | | | |||| ||| | ||||| | || || || || ||||| ||||| Sbjct 103882 ACTCGACGACCTCACAGCACAAGTTACTGGAGCGAATAGTGCCCAAGTTTTGCTGATTCG 103941 Query 62853 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 62912 ||| || || |||||||| || || ||| | || || || ||||| ||||||| | Sbjct 103942 ACTTGCGATTGCATGCATCCTTGTAGAGCATGTAGGGTGTGCCGGTTTCGATCTGAGCGT 104001 Query 62913 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTG------TATCTCTTTT 62966 | | ||| || ||| | | | |||| | || | ||| | | || Sbjct 104002 CCAAAATGGCGAACCACAATTGTTGCGCCT---TGATGGTCTTGCGGGCCAAGCCCTGGG 104058 Query 62967 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAG 63026 | |||||| || ||||| ||||| || || ||||| | | ||| |||| Sbjct 104059 C---TTCGTACTTGGTGTACAAGGCCTCGAATTCATCACCCCAGCAGTCGAACAGACCAG 104115 Query 63027 GACATTCATCCGGACACATCAACGA--CCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63084 ||||| || || | || || |||||| |||| | | ||| || ||||| || Sbjct 104116 TCGCTTCATTAGGGCAGA--AAAGACTCCACTCGCCGTTGGCTTCCACACGCTTCATGAA 104173 Query 63085 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63144 | ||| || ||||| | || ||| ||||| | | | ||| || || || Sbjct 104174 CAAATCTGGGATCCACATGGCGTAAAACAGATCACGTGCACGATGAAGTTCATTACCGTG 104233 Query 63145 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 |||||| | | ||| |||||| | | | || | ||||||||| ||||| || || || Sbjct 104234 ATTCTTCCTCAAATCCAGGAACTCAAATACGTCGGCATGCCACGGCTCCAAATAGATTGC 104293 Query 63205 -CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63263 | || || | || ||| || || ||||| | ||| | ||| |||| ||| | | Sbjct 104294 AAACGACCCCTTG-CGCTTGCCACCACCTTGATCAACGTAACGAGCAGTGTCATTGAACA 104352 Query 63264 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCAC 63323 | | |||||| || | |||||| ||||| || ||||| || || ||| ||||| Sbjct 104353 CACGCAACATAGGCACAATACCGTTGGACGTGCCATTTGTACCACGGATGTAGCTATTCG 104412 Query 63324 TGGCACGAATATTACTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63381 | || ||||| || || |||| || || ||||||||| || ||||| |||| Sbjct 104413 TCGCGCGAATGTTGTGCATGCTGAT--GCCGATACCCCCTGCCCACTTGGAGATGCATGC 104470 Query 63382 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 63441 |||| | || | || || || |||||||| ||| ||| || |||| | || || Sbjct 104471 GCATTGCTTGAGAGTGTCGTAAATGCCCTCAATAGAATCGTCTTGCATGGCCAATAAGAA 104530 Query 63442 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGT 63501 ||| ||||| ||| | || || || || ||||| | || || | ||||| || Sbjct 104531 ACACGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAACAGTGTTGGTGTGGCGTGCGT 104590 Query 63502 AAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63560 || | || | ||| | |||||||||| | | ||||| || || Sbjct 104591 GAAGAACGAGAGCGACATGTA-CTCATACGTCTCAAGCACCAGCTTGATATCTTCTTTAT 104649 Query 63561 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603 | || ||||| ||||||||||| | ||| ||||| |||| ||| Sbjct 104650 GGATGCCTACAGCGACACGCATGATCATTTGCTGCGGTCGTTC 104692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629782288000