Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq22 140 3e-28 >seq22 Length=480975 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || ||| | || || | || |||||| | || Sbjct 153999 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTCG 153940 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| |||| || |||||||||||||| || || ||||| ||||| ||||| ||| Sbjct 153939 GACTCTATTGACAATGTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCTGATCAA 153880 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || || || || || ||||||| |||||| || |||| || || Sbjct 153879 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACGTTGAGCGACTATAAC 153820 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || ||||| || || ||||| Sbjct 153819 ATCCAAAAGGAGTCGACGCTCCACTTGGTGCT 153788 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | || ||||| | || Sbjct 153771 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 153712 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| |||| || ||||||| || ||| ||||| ||||| ||||| || || ||| Sbjct 153711 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 153652 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||| || || || | ||||| | ||| ||| || | ||||||||| Sbjct 153651 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 153592 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| || | || || ||||| Sbjct 153591 ATTCAAAAGGAATCGACATTGCACTTGGTGCT 153560 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | || ||||| | || Sbjct 171881 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 171940 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| |||| || ||||||| || ||| ||||| ||||| ||||| || || ||| Sbjct 171941 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 172000 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||| || || || | ||||| | ||| ||| || | ||||||||| Sbjct 172001 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 172060 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| || | || || ||||| Sbjct 172061 ATTCAAAAGGAATCGACATTGCACTTGGTGCT 172092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326521268200