Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq17 131 1e-25 seq22 127 2e-24 >seq17 Length=584494 Score = 131 bits (144), Expect = 1e-25 Identities = 721/1135 (64%), Gaps = 50/1135 (4%) Strand=Plus/Plus Query 129138 AAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTC 129197 ||| ||||| || | ||||| || ||| |||||| ||||| ||||||| ||||| Sbjct 103283 AAATTCACCAGCGAGCACGCGACGGTTGTACATGTTGGACGTGAATGGCTCAATGGATTC 103342 Query 129198 ATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTT 129257 ||| ||||| || || ||||| || | ||| || |||||| |||| | || ||||| Sbjct 103343 ATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGCGCCAACAACAGGGAGTT 103402 Query 129258 TCGCAAACCGTGCTGTTTAATGTCttt---ttttAATTGTGTCCAGTCCCACATC---GA 129311 |||| ||| || |||| | ||| ||| ||| | ||| ||||| | || Sbjct 103403 GCGCACACCATG---TTTAGCGACTTGAGCTTTCAATGCAGCCCAATCCCAGAGACCAGA 103459 Query 129312 TGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAA 129371 ||| || ||| | ||||| || | || || || ||| || | || | Sbjct 103460 TGTTGGAGTGACACCCCACATATCAAACTGGAAGATGCCCTTGCTCACAGGGGAGCCCTC 103519 Query 129372 GTAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAA 129431 ||| | || | | ||| || | ||||| | ||| | ||||||| || ||| | Sbjct 103520 GTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATAGATGCTTCCATGGCTCCATA 103579 Query 129432 ATAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCAT 129491 || | ||||| ||| | ||||||| || || || || |||||| | || | Sbjct 103580 GTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGCTCACTTTCGAAGGGGAA 103639 Query 129492 ACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTT 129551 | || | ||| | || ||||| ||||| | ||| | ||| | || |||||| Sbjct 103640 CCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGGCGATGTCG 103699 Query 129552 TCTATTGGATTT-TTG--TGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTT 129608 | ||| ||| ||| | | | | | |||||||||||||| || || | ||||| Sbjct 103700 TAGATTAGATCGCTTGGCTTCTGGGATC---GGATAGTAGTTGATATCAATGACCTTGTT 103756 Query 129609 TAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTAC 129668 | ||| || |||||| ||||| | | | | | | | ||| || || || Sbjct 103757 CAGATTTCTGGTCACAATCTTCGTGATTTCGTAGAGCTTCTGAAAGTTAAAC------AC 103810 Query 129669 ATCGATGTCGACAAATTGATTGACA--CAAATCGAGGCCAAATTGCAGACGGCACTTTCG 129726 | | |||||||||||| | |||| ||| || ||||| ||||| || || |||| Sbjct 103811 ACCATTGTCGACAAATT--TGGACAGTGCAATGGACGCCAAGTTGCACACCGCGACTTCG 103868 Query 129727 TTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAA 129786 | ||| |||||||||| | || |||||| ||||| ||| |||||||| Sbjct 103869 TCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTACTGGAGCGAATAGTGCCCAAG 103928 Query 129787 TGCTTTTGATT--ACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCG 129844 | | ||||| |||| | ||||| ||||| ||||| | |||||| || ||||| | Sbjct 103929 TTTTGCTGATTCGACTTGCGA--TTGCATGCATCCTTGTAGAGCATGTAGGGTGTGCCGG 103986 Query 129845 TTTCGACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTGTCTT---- 129900 |||||| || | || | ||||| |||| | | | |||||||| ||||| Sbjct 103987 TTTCGATCTGAGCGTCCAAAATGGCGAACCACAATTGTTGCGCCTTGAT-GGTCTTGCGG 104045 Query 129901 ACAAATTTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTC-TGAGCCGTGTAC 129959 | || ||| ||||| |||| || ||||| | | || | | Sbjct 104046 GCCAA---GCCCTGGGCTTCGTACTTGGTGTACAAGGCCTCGAATTCATCACCCCAGCA- 104101 Query 129960 GGTGTCGAGCA-AC--GGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTC 130016 ||||| || || | || |||| || || | | ||||||| || | ||||| Sbjct 104102 ---GTCGAACAGACCAGTCGCTTCATTAGGGCAGAAAAGACTCCACTCGCCGTTGGCTTC 104158 Query 130017 GACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCT 130076 || || ||||| |||||||| || | ||||| |||||| |||| ||| || || Sbjct 104159 CACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAAACAGATCACGTGCACGATG 104218 Query 130077 ATCCTCGGCACCCATGTTACGT-TTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACG 130135 | || | || || | | | ||| || ||||| || | | |||||| ||||||| Sbjct 104219 AAGTTCATTA-CCGTGATTCTTCCTCAAATCCAGGAACTCAAATACGTCGGCATGCCACG 104277 Query 130136 GTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCA 130192 | || | ||| ||||| | | ||||| || ||| || ||||| ||||||| || Sbjct 104278 GCTCCAAATAGATTGCAAACGACCCCTTGCGCTTGCCACCACCTTGATCAACGTAACGAG 104337 Query 130193 CGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGT 130247 | | | ||| | || |||||||| | | | | ||||||| |||||| ||||| Sbjct 104338 CAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGACGTGCCATTTGT 104392 >seq22 Length=480975 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || ||||| || || || |||| | || || ||| | || Sbjct 171653 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACCATCACATTGGACGTCGAACCGTCC 171712 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || |||||||||| |||||||||||||| || || || || ||||| Sbjct 171713 GACTCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAG 171772 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || ||| | |||||| ||||| | ||| |||||| Sbjct 171773 CAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAAC 171832 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | || || || ||||| |||| || ||| Sbjct 171833 ATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGGT 171880 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || ||||| || || || |||| | || || ||| | || Sbjct 154227 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACCATCACATTGGACGTCGAACCGTCC 154168 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || |||||||||| |||||||||||||| || || || || ||||| Sbjct 154167 GACTCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAG 154108 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || ||| | |||||| ||||| | ||| |||||| Sbjct 154107 CAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAAC 154048 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || || || ||||| |||| || || Sbjct 154047 ATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGG 154001 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || ||||| | || |||||| | | Sbjct 153771 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 153712 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || || || || |||||||| |||||||| || |||||| Sbjct 153711 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 153652 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || ||| | || || || || | |||||||| Sbjct 153651 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 153592 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| ||||| || Sbjct 153591 ATTCAAAAGGAATCGAC 153575 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || ||||| | || |||||| | | Sbjct 171881 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 171940 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || || || || |||||||| |||||||| || |||||| Sbjct 171941 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 172000 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || ||| | || || || || | |||||||| Sbjct 172001 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 172060 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| ||||| || Sbjct 172061 ATTCAAAAGGAATCGAC 172077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726567678200