Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2 168 1e-36 seq20 123 5e-23 >seq2 Length=1145976 Score = 168 bits (186), Expect = 1e-36 Identities = 569/869 (65%), Gaps = 18/869 (2%) Strand=Plus/Minus Query 251545 TATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATG 251604 |||||| ||||| || |||||||| | |||||||| ||| ||||| | ||||| Sbjct 132574 TATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAGATCATGTCCATC 132515 Query 251605 AAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAG-ATGCG 251663 |||| || ||||| |||| ||||| ||||| ||||| || | | || | || Sbjct 132514 CAGTCAAAAGGGTTCTTGGCGTTGTAGATCTTGGATACACCAAGCGC-ATGTAGCAAACG 132456 Query 251664 GTCTGCCACA-AACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATC-ATACGA 251721 || || ||| || || | ||||| | |||||| ||||||||||||||| || | | Sbjct 132455 ATCAGC-ACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCATGCCAATCAATTCCA 132397 Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCC 251781 | ||| | | || || ||||||||| || | | || || || | | ||| | Sbjct 132396 C-AGGGAGCGAATCCTTGACGAATTCCTTCTCAATCGTGACGGCGTCACCAATGATTTCG 132338 Query 251782 TTCACCTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACA-GGAGCTCGCCAAACTG 251840 | ||| ||| | | |||||||| | ||||| ||||||| ||| || |||| | Sbjct 132337 TGCACGCGTGACTCCGGAAGCTTGTTGACGAGCTTGGAGTACATCAAGCACG-CAAAGTC 132279 Query 251841 TTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCAC 251900 ||||| || || || |||||||||| || || || | || || |||||||| | Sbjct 132278 ACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCAGGCATGAG 132219 Query 251901 CCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 |||||| ||| | | ||||||||| | ||| ||||| || || || | | |||||||| Sbjct 132218 CCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAGAAGATTCCCTCGAC 132159 Query 251961 ACACACCCATGCAACAAGGCGCTCAGCAAACGACTTGTCCTGCGA---CAAGAACTTCTG 252017 | | | |||| | || || |||||| | | | |||| | ||||| Sbjct 132158 AGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGCGCGAGTCGCACCACTTCAA 132099 Query 252018 TGCCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTT 252077 |||||| |||||||| || ||||| |||||||| ||| | || || | | Sbjct 132098 TGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCGATGGCA-CGTAGCAAGTGGT 132040 Query 252078 CC-GCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGA 252136 || ||||| ||| | |||| | |||| || || ||||||| || || || | Sbjct 132039 CCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAAGCGAGTACACTTCGGAGTGAA 131980 Query 252137 TGGATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCG 252196 || ||| || |||||| | | || || ||||| ||| | ||||| Sbjct 131979 TGTTTTCAATGGCGATCTGGAATCCGTAAAAGCAGCGCGCCTCAGGCACTTGCACTTCAC 131920 Query 252197 TGGAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAA-GCCA 252255 | || || | |||| ||| || |||| || ||||||||| | |||||||| |||| Sbjct 131919 TACTGAAATTCATCGCAAGGTTTTCGTTCACAATCCCATCGCTGGCAGCAAAGAACGCCA 131860 Query 252256 AGAATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATG 252315 || | | |||||||||| || || | |||| | | |||| | |||||| | | Sbjct 131859 AG-ACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCATCTTGAC---CCAGTCCTTCAGG 131804 Query 252316 TCCTGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATT 252375 || || || | | |||||| | ||||| || | | | |||||||||||||| Sbjct 131803 TCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTCAGCCTTCTTGTACATG 131744 Query 252376 GCGAACACATCAGGGTACTTGATTGGGAA 252404 || |||| || || | | ||||||||| Sbjct 131743 GCCCACACTTCCGGCTCTTGGATTGGGAA 131715 >seq20 Length=529036 Score = 123 bits (136), Expect = 5e-23 Identities = 663/1039 (64%), Gaps = 73/1039 (7%) Strand=Plus/Minus Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410 ||| |||| ||||||| |||||| | || |||||||| | |||| |||| ||| | || Sbjct 187528 GATTTGTGCAACTGTGAGTTCTCGTTGGCTTATGGTGGTATGATTTTGCTCAACAATGCC 187469 Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470 || || | |||||||||| |||| || ||| | |||||| || || |||||| Sbjct 187468 CGTCTGCGCCTCAAGCGTGGTCACCGTTACGGTTTGTGCGGTCCTAACGGTTGTGGTAAG 187409 Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATCTGAG 279530 || || ||||| || ||||| ||||| || |||||||||| || || ||| Sbjct 187408 TCGACGCTTATGCGTGCGATTGCCAACGGCCAATTGGAAGGATTCCCAAAGAAGGATGAA 187349 Query 279531 GTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGT---- 279586 | | ||| || | ||| |||||| || | | | || ||| ||| ||| Sbjct 187348 TTGAAGACTGTCTTTGTGGAGCACAACTTGCAGGCTTC------GGA-AGCCATGTTGCC 187296 Query 279587 -GT--TCGACTTCCTAACGTCTGACAATCAGGTTATGGAA--ATCAGCTCTCCTGAGGAA 279641 || | || ||| | |||| | || | | || ||| || | | ||| | ||||| Sbjct 187295 AGTCATTGAATTCATGT--TCTG-CGATGAAGA-ATTGAAGGAT-ACCCCTCGTCAGGAA 187241 Query 279642 ATCATCCAGAAACTGGAGGCCAATGGTTT---TGATGAAAGAATGCGTAATCTGCCAGTA 279698 |||| | | || | | ||||| |||||||| ||| |||||| || Sbjct 187240 GTCATTGACACGCTTGCTAGCGTCGGTTTCACTGATGAAA---TGCAGGCTCTGCCCGTG 187184 Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || || ||||||||||||||||| ||| | |||| ||||| || ||| Sbjct 187183 TCGTCGCTCTCTGGTGGTTGGAAGATGAAATTGGAGTTGGCTCGTGCCATGCTTATGCAC 187124 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || || | ||||| || || || ||| |||| || ||||| || ||| Sbjct 187123 GCCGATATTCTGTTGTTGGATGAACCGACGAATCACTTGGATGTCAAGAACGTTGCGTGG 187064 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 | | | ||| || | |||| ||| ||| || || |||| || || || |||||| Sbjct 187063 TTGGAGAACTATCTCAACAGTTTGACGAACGTGACTAGTATCATGGTTTCCCATGACTCT 187004 Query 279879 GGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGA---GCAAAATCTGAAGCTC 279935 || ||| | || |||||| | |||||||||||| || | || |||||| Sbjct 187003 GGTTTCTTGGACAACGTGTGTACCAACATCATTCACTACGAAACCCGTAAGCTGAAGACT 186944 Query 279936 TCCAAGCACATCGGCAACCTGTC--TGCTT-TCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992 | |||| |||||||| || | || ||| | ||| ||||| || ||| Sbjct 186943 TACAAG------GGCAACCTTTCCAAGTTTGTCGAAGTTAAG---CCTGAAGCTAAGGCC 186893 Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052 |||||||| || ||| ||| || ||||| ||||| || || || || ||| Sbjct 186892 TACTATGAATTGGAGGCCGCGACTTTCAAGTTTACTTTCCCAGAACCTGGTTTCTTGGCC 186833 Query 280053 GGCATC-ACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCC 280111 | ||| | | ||| || || | || | | ||| | || | |||| | Sbjct 186832 GATATCAAGAACAAGGGTAAGC-CGATTA------TTCGTTTGACCAACTGTTCTTACAC 186780 Query 280112 ---CAATGGCC--------CCAAC-ATCTTCAGCAGTGTC---AACTCGCAGGTT-TCTA 280155 | ||||| ||| | ||| || || | || || || ||| || Sbjct 186779 GTACCCTGGCCGTGATAAGCCATCGATCAACAACA-TCTCGGTGACGTGCGCGTTGTC-- 186723 Query 280156 TGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAG 280215 || | || || | ||| |||| ||||| ||||| |||||||| || || ||||| Sbjct 186722 -GAGC---CGTATCGCTGTGCTTGGGCCCAACGGTGCTGGTAAGTCGACGCTCATCAAGA 186667 Query 280216 TCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGA 280275 | ||||||| || | | | || || |||| |||||||| || |||||| Sbjct 186666 TGTTGACTGGTGAAGTCGAACCAACGTCCGGTACCGTGTGGAAGCACCCTGCCATGCGTT 186607 Query 280276 TGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTA 280335 | || ||||| || |||||||| ||||| ||||| || | || |||| || ||| ||| Sbjct 186606 TTGCGTACGTGGCGCAGCACGCCTTCCATCACATTGAAGAGCATTTGGATATCACTGCTA 186547 Query 280336 ACCAATACATTCAGTGGCG 280354 | || ||||| |||||||| Sbjct 186546 ATCAGTACATCCAGTGGCG 186528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833112635480