Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq58 248 2e-60 seq22 143 5e-29 seq78 136 7e-27 seq56 114 2e-20 seq20 107 4e-18 seq27 91.5 3e-13 seq3 89.7 9e-13 >seq58 Length=246340 Score = 248 bits (274), Expect = 2e-60 Identities = 412/587 (70%), Gaps = 6/587 (1%) Strand=Plus/Minus Query 268211 CCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCG 268270 || || |||| ||| || ||||| || || | ||| ||||| |||||| ||| Sbjct 199530 CCCGTGGCAACCACGAAATCCTCGGGTTCGTCATGCTGCAGCATGCGCCACATACACTCG 199471 Query 268271 ACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCAT 268330 || || ||||||||||| |||||||||||| | | || | ||| || | | | || || Sbjct 199470 ACGTAATCCCGCGCATGACCCCAATCGCGCCTCGATTCAAGGTTGCCAATGTAAAGACAC 199411 Query 268331 TTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTC 268390 | | | || | | ||| ||| |||| ||||| || || || || ||||| Sbjct 199410 TCGTCAATACCCGCGTGAATGCGCACAACTGCGCGCGTGATCTTGCGTGTGACAAACGT- 199352 Query 268391 TCGCCACGTA-GAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC-GCGAACATGCCAT 268448 | ||| | | | || || |||||||| ||||| ||||| || ||| || |||||||| | Sbjct 199351 TGGCCCCCTGCGTGGACTTTCGTGGTTAAAGAGAATGCCATT-CACTGCAAACATGCCGT 199293 Query 268449 ATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAG 268508 | || ||||||||||||||||| ||||||| |||||| ||| || | | ||||| | Sbjct 199292 ACGCTTCACGGTAGTTCACGACGCTCCAGTACGCAAACTGCTTGGCGATGCCATACGGTG 199233 Query 268509 AACGTGGATGGAAGGGCGTCGTGATC-TTTTGAGGGATTTCTCGGACTTTGCCAAAGAGC 268567 | || |||| ||| || || || || ||||| || | || | |||||||| ||||| Sbjct 199232 ATCGCGGATAGAATGGTGT-GTTTTCGTTTTGCGGTGTAGCTTGCGCTTTGCCATAGAGC 199174 Query 268568 TCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCC 268627 || ||| || |||||||||||||| || |||||||| | ||| || | ||||| Sbjct 199173 TCACTGGTTGACGCTTGGTAGAACTTGGTAGTTTTTTCCATACCACAATTGCGGATACAA 199114 Query 268628 TCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAAT 268687 | | || || || || ||||| |||| ||||| ||||| || || | ||| ||||| Sbjct 199113 TTCAATAAGCGTAGTGTACCCATCGCATCGACGTCGGCTGTGTATTCGGACATTTCGAAC 199054 Query 268688 GACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGC 268747 || |||| ||| || | || |||| || |||||||| ||||| || || | Sbjct 199053 GAGACCTTGACGTGCGACATCGCTCCCAAATTGTAAACCTCGTCCGGCTTAACGCGAGCA 198994 Query 268748 ACGATCTTCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCAA 268794 | ||||| ||| |||| |||||| |||||||| || |||||||| Sbjct 198993 ATGATCTGACAGAGATTCGATGAGTCAGTGAGGTCGCCATAGTGCAA 198947 >seq22 Length=480975 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||||||||||||| | || ||||| || || ||||| || ||| Sbjct 154001 CCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTC 154060 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| || || || ||||| | ||| || || || || Sbjct 154061 AACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGG 154120 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||||||||||||| ||||| ||||| | ||| | | ||| || Sbjct 154121 ATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACG 154180 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || ||||| | ||||| || || |||||||| Sbjct 154181 TCCAATGTGATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 154227 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||||||||||||| | || ||||| || || ||||| || ||| Sbjct 171879 CCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTC 171820 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| || || || ||||| | ||| || || || || Sbjct 171819 AACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGG 171760 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||||||||||||| ||||| ||||| | ||| | | ||| || Sbjct 171759 ATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACG 171700 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || ||||| | ||||| || || |||||||| Sbjct 171699 TCCAATGTGATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 171653 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| ||||| ||||| |||||||||||||| ||| Sbjct 153773 CCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTC 153832 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| |||||||| || ||||| || | | ||||| || || ||| Sbjct 153833 AACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCAGGAGGA 153892 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| ||||| || ||| ||| || || || | ||| | | || || Sbjct 153893 ATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACA 153952 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||| ||||| | ||||| || || |||||||| Sbjct 153953 TCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 153999 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || || || |||||||| || | |||||||| | || || || ||||| || || ||| Sbjct 153539 TAGTTGCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAA 153598 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || | || | || ||||| | |||||| || || || ||||| | |||||| || Sbjct 153599 TCACTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCT 153658 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || ||||| ||||||||||| || ||||| ||| ||| || || | ||| | | | Sbjct 153659 GGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGT 153718 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| |||||||| || || || | ||||| ||||| |||||||| Sbjct 153719 TCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 153771 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || || || |||||||| || | |||||||| | || || || ||||| || || ||| Sbjct 172113 TAGTTGCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAA 172054 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || | || | || ||||| | |||||| || || || ||||| | |||||| || Sbjct 172053 TCACTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCT 171994 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || ||||| ||||||||||| || ||||| ||| ||| || || | ||| | | | Sbjct 171993 GGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGT 171934 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| |||||||| || || || | ||||| ||||| |||||||| Sbjct 171933 TCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 171881 >seq78 Length=145407 Score = 136 bits (150), Expect = 7e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| || || || || || | |||||||| || ||||| || || || || Sbjct 113023 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 113082 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | ||| || || || ||||| ||||||||||| || |||||| ||||||| || Sbjct 113083 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCA 113142 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 ||| |||| | | ||| || |||| |||||||| || ||||| || || |||||||| Sbjct 113143 ATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGAAG 113202 Query 68454 ATCTGCAT 68461 |||||||| Sbjct 113203 ATCTGCAT 113210 >seq56 Length=249942 Score = 114 bits (126), Expect = 2e-20 Identities = 257/379 (68%), Gaps = 19/379 (5%) Strand=Plus/Minus Query 173102 ATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACTCGTTCGGTAACTCG 173161 ||||||||||| ||||||||||||||||| ||||||| || || || ||||| || ||| Sbjct 92723 ATTGACACGATCATGCACTTTGCTGCGCAATCCCATGTTGATAATTCTTTCGGGAATTCG 92664 Query 173162 CTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCTGGAATGCGCGAGGCTC 173221 | || || | | || ||| | | || || ||||| || || ||| |||||| || Sbjct 92663 ATTGCGTTCAGTAAGACCAATATTTTGGGTACACACGTGCTGCTAGAAGCGGCGAGGATC 92604 Query 173222 TATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACGAAGTATACGGCGAGAGCAGT 173281 ||||||| || || ||| || | ||| || || || || || ||||| ||| | Sbjct 92603 CATGGCGGGATCAAGAAGTTTATTCACGTGAGCACAGATGAGGTGTATGGCGAAGGCAAT 92544 Query 173282 CTGGGCAAAAAAG----AAGGCCTCGATGAACACTCGTCCCTCGAGCCAACAAACCCATA 173337 | ||| | | || | | ||| || || || || ||||| ||||| || || Sbjct 92543 ---GCCAACACCGTGGCAATG-CGCGAAGATCATACG---CTTGAGCCCACAAATCCGTA 92491 Query 173338 TGCAGCAGCCAAGGCTGGTGCCGAA-ATGATGGCACGTGCATATCACACATCGTACAAGC 173396 ||| || | || ||||| || ||| | || || | |||||||| || | ||| Sbjct 92490 TGCCGCCACGAAAGCTGGCGCGGAATTTCTTGTCAAG-GCATATCAGCGCTCTTTTCAGC 92432 Query 173397 TAC---CAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCGCATCAGTTCCCCGAAA 173453 | | | || ||| ||||| | ||||| ||||| || |||||||| | || || | Sbjct 92431 TCCCTACTGTGATC---ACGCGGAGTAACAACGTGTACGGACCGCATCAATATCCAGAGA 92375 Query 173454 AAATGATCCCAAAATTTAT 173472 || ||||||| || ||||| Sbjct 92374 AATTGATCCCCAAGTTTAT 92356 >seq20 Length=529036 Score = 107 bits (118), Expect = 4e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 ||||||||||||||||| || | || || |||| || | ||||| || ||||| || Sbjct 186528 CGCCACTGGATGTACTGATTAGCAGTGATATCCAAATGCTCTTCAATGTGATGGAAGGCG 186587 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| || |||||||| | |||||| || ||||||||||| | || || ||| Sbjct 186588 TGCTGCGCCACGTACGCAAAACGCATGGCAGGGTGCTTCCACACGGTACCGGACGTTGGT 186647 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | | || || || | | |||||||||||| | ||| || ||||| ||||| |||| | Sbjct 186648 TCGACTTCACCAGTCAACATCTTGATGAGCGTCGACTTACCAGCACCGTTGGGCCCAAGC 186707 Query 225161 AC 225162 || Sbjct 186708 AC 186709 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 224450 TGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAGC 224509 || ||||| | || ||||| ||| |||| || | ||| | | ||| || || ||| Sbjct 185985 TGCGAAATCATAACCACACCACCGTTGAATTCCTGGATGGCAGTAGCAAGAGCACCCAGC 186044 Query 224510 GACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCAC 224569 || || || || | | | ||||| || ||||| || | | | ||| ||| | ||||| Sbjct 186045 GAATCACGATCCAAGTAATTCGTAGGTTCATCAAGCACCAAGATGTGAGGGTTCAGCCAC 186104 Query 224570 AGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCGAG 224629 | || ||||| | ||| | ||||||||| ||||| || || || || || || |||||| Sbjct 186105 ATAGCAGCACCCAACACGACCTTCACCTTTTGACCACCCGAAAGACCACGCATACGCGAG 186164 Query 224630 TGAGT 224634 ||||| Sbjct 186165 TGAGT 186169 >seq27 Length=441917 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| || |||||| |||||| || ||| |||| | || || || ||| Sbjct 63748 CCTTCCTTGTCCTGGATCTTTTGCTTGACATTGTCAATGCTGTCCGATGGCTCCACATCC 63807 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || |||||||| || ||||||||||| || ||||| ||||||||| Sbjct 63808 AATGTGATGGTCTTGCCCGTGAGGGTTTTCACGAAAATCTGCATT 63852 >seq3 Length=1043435 Score = 89.7 bits (98), Expect = 9e-13 Identities = 193/286 (67%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 176234 CAGTTGTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACC 176293 |||| ||||||||| || | || | || |||||||| || || | || | || Sbjct 493354 CAGTAATGTGAAGATGTATCGAGGACTGGCGGCATCCTTGCCACCCTGTAAACGTGTCCC 493295 Query 176294 GAATTGTCC-GCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCA 176352 |||||| || | || | || || | | || || | ||| ||||||||||| |||| Sbjct 493294 GAATTGACCAGATGGGTACAATAAAGGTAAA-TTGTTGGCACCAACGTAGTCTTGCGCCA 493236 Query 176353 TTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTG 176412 | ||| || | || || ||||| |||||||||||||| | | || |||||| Sbjct 493235 TATTGACAATCGTTGAATGCAGCGACGCTTCGCCGTGGTGATACGCTGTGTGCTCACTAC 493176 Query 176413 TGTATCCGGCAAACTGCGCGACTTTGATTTCTTGTACGAGGTTGCGCTTCAACGCCGAGA 176472 ||| || || |||||||| || |||| |||| ||| |||||||| | | || Sbjct 493175 AGTACCCCGCTAACTGCGCTACCTTGACCTCTTTCGTGAGCTTGCGCTTTAGACATGCGA 493116 Query 176473 ACAGAATCTTCCGCTGCGAGGGCTTCAGACCATCGACGACCGACGG 176518 ||| || || |||||||| || |||||||| | || ||||| Sbjct 493115 ACAAAACTTTTCGCTGCGAAACTTTGAGACCATCAATAACGGACGG 493070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619174321600