Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 192 1e-43 seq17 141 2e-28 >seq2 Length=1145976 Score = 192 bits (212), Expect = 1e-43 Identities = 554/841 (66%), Gaps = 25/841 (3%) Strand=Plus/Plus Query 42303 TGGTCCATGTACAAGAAGGC----GC-AGTTCTCCAACTGGACCGCCGAGGAGATTGACC 42357 ||| |||||||||||||||| || |||| | |||||||| || || | || Sbjct 131739 TGGGCCATGTACAAGAAGGCTGAAGCGAGTTTT-----TGGACCGCTGAAGAACTGGATT 131793 Query 42358 TGGCCAAGGACACGGCCGGCTGGGAGTCAC--TGTCTGAGAACGAAAAGTTTTTCCTCAA 42415 ||| | ||| | | ||||| ||| || | || |||||| || ||| |||| Sbjct 131794 TGGTGCATGACCTGAAGGACTGGG--TCAAGATGACCGACAACGAACGCTTCTTCATCAA 131851 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 || | |||| ||||| || ||| || || || || || || ||||| || | | Sbjct 131852 GCACGTCTTGGCGTTCTTTGCTGCCAGCGATGGGATTGTGAACGAAAACCTTGCGATGAA 131911 Query 42476 GTTCATGAAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 |||| | || ||||| || | | |||||||||||||| ||||| |||||||| |||| Sbjct 131912 TTTCAGTAGTGAAGTGCAAGTGCCT-GAGGCGCGCTGCTTTTACGGATTCCAGATCGCCA 131970 Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCG 42594 | || ||| | ||||| || |||||| | || | |||| |||||| || || Sbjct 131971 TTGAAAACATTCACTCCGAAGTGTACTCGCTTTTGATTGACACATACATCAAAGACCCGA 132030 Query 42595 TCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGG 42654 |||| || || | ||||| || || || || ||| | | |||||||| Sbjct 132031 CCGAGAAGGACCACTTGCTACGTGCCATCGAAACCATCCCATGCGTGACCAAGAAGGCCA 132090 Query 42655 ACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 ||||| | || ||| ||| | || || | | | || || | | || | Sbjct 132091 GTTGGGCATTGAAGTGGTGCGACTCGCGCGCTGCTGCCTATGCTGAACGGATTTTGGCAT 132150 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 || | || |||||||| |||||||| ||||| ||||| ||||||||||||| | ||| Sbjct 132151 TTGCGGCTGTCGAGGGAATCTTCTTTTCGGGTTCCTTCTGCTCCATCTTCTGGTTGAAGA 132210 Query 42775 AGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 || | | ||||| || |||| |||||||| ||||||||||| | || || ||| Sbjct 132211 AGCGTGGGCTCATGCCTGGTCTCAGTTTCTCGAATGAACTCATCAGTCGTGATGAAGGGT 132270 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGG 42894 |||| | |||||||| ||| | ||| ||| | | | ||| |||||| || || Sbjct 132271 TGCACTGTGACTTTGCGTGCTTGATGTACTCCAAGCTCGTCA---ACAAGCTTCCGGAGT 132327 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954 || || | | ||||| || ||||| ||| |||||||| ||| ||| | | | Sbjct 132328 CACGCGTGCACGAAATCATTGGTGACGCCGTCACGATTGAGAAGGAATTCGTCAAGGATT 132387 Query 42955 CGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGTACATCCAGTAC 43013 |||| || ||| || | |||||||| | |||| || ||||| ||||||| | | | Sbjct 132388 CGCTCCCTGTGGAATTGATTGGCATGAA-CTCGACGCTGATGTGTCAGTACATTGAATTC 132446 Query 43014 GTCGCCGACCATCTCCT--GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCC 43071 || || | | | || ||| | | ||| | | |||||||| | | || Sbjct 132447 TGTGCTGATCGTTTGCTACATGC--GCTTGGTGTATCCAAGATCTACAACGCCAAGAACC 132504 Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131 | || |||| ||||| | ||||| || ||||||||||||| || || |||||||| | Sbjct 132505 CTTTTGACTGGATGGACATGATCTCACTGCAGGGCAAGACCAATTTCTTTGAGAAGCGTG 132564 Query 43132 T 43132 | Sbjct 132565 T 132565 >seq17 Length=584494 Score = 141 bits (156), Expect = 2e-28 Identities = 677/1060 (64%), Gaps = 42/1060 (4%) Strand=Plus/Plus Query 244082 AGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTG 244141 |||| | |||| || | | ||| || || | |||||||| || | ||| | |||| Sbjct 103263 AGGTACTTGTTGACGATCGTAAATTCACCAGCGAGCACGCGACGGTTGTACATGTTGGAC 103322 Query 244142 CTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATG 244201 ||| ||||| ||| || | ||||||| ||||| || || ||| || |||||| Sbjct 103323 GTGAATGGCTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATG 103382 Query 244202 GGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCT--CGT 244259 |||| || || ||| ||| | ||| || || | ||| | | |||||| | Sbjct 103383 GGCGCCAACAACAGGGAGTTGCGCACACCATGTTTA-----GCG-ACT-TGAGCTTTCAA 103435 Query 244260 TCCAGTCCCACATGCCCGAGA---GGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCA 244316 | ||| |||| || || |||| | | | | || || |||||||| |||||||| | Sbjct 103436 TGCAG-CCCA-ATCCCAGAGACCAGATGTTGGAGT--GACACCCCACATATCAAACTGGA 103491 Query 244317 GCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCA 244376 | |||||||| || ||| ||||||||| || || || || | || || | Sbjct 103492 AGATGCCCTTGCTCACAGGGGAGCCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAA 103551 Query 244377 GCTT-ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATG 244435 | | | || | | || | ||| | ||||| | || || || || |||||||| Sbjct 103552 GTTCCATAGATG-CTTCCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAAT 103610 Query 244436 TCGCGGGCCTTGC-CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCC 244494 || || || |||| | | |||||||| ||||| | || || | || |||| || Sbjct 103611 TCTCGCGC-TTGCTCACTTTCGAAGGGGAACCCCATGAGAATAAACGCATCAGCCAACCC 103669 Query 244495 CTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGG 244554 ||||| || || || | || | ||||| || || ||| ||||||| || | || Sbjct 103670 TTGCACACCAATACCCACAGGGCGATGTCGTAGATTAGATCGCTTGGCTTCTGGGATCGG 103729 Query 244555 GTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGC 244614 || ||||| || || |||||||| || || | ||| | || || ||| Sbjct 103730 ATAGTAGTTGATATCAATGACCTTGTTCAGATTTCTGGTCACAATCTTCGTGATTTCGTA 103789 Query 244615 CAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTT 244674 ||| |||||||| || | | | | | ||| |||| | | Sbjct 103790 GAGCTTCTGAAAGTTAAACAC------ACCATTGTCGA------------CAAATTTGGA 103831 Query 244675 GAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAAT 244734 || || | | |||| |||||| || || || || ||| | ||||||| ||| | Sbjct 103832 CAGTGCAATGGACGCCAAGTTGCACACCGCGACTTCGTCCTTGGATGTGTACTCGACGAC 103891 Query 244735 CTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTT 244794 ||| ||| | ||||||| | || ||||||| || || ||||| |||||| || Sbjct 103892 CTCACAGCACAAGTTACTGGAGCGAATAGTGCCCAAGTTTTGCTGATTCGACTTGCGATT 103951 Query 244795 GCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCT 244854 ||| || ||||||||||||||| |||| ||||| |||| ||| ||| | | | | Sbjct 103952 GCATGCATCCTTGTAGAGCATGTAGGGTGTGCCGGTTTCGATCTGAGCGTCCAAAATGGC 104011 Query 244855 GTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGT 244914 | ||| | | ||||||| ||| |||| ||| ||||| || ||||| ||| Sbjct 104012 GAACCACAATTGTTGCGCCTTGATGGTCTTGCGGGCCAAGCCCTGGGCTTCGTACTTGGT 104071 Query 244915 GTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCC-GGGGCACGACGCCGGGC 244973 ||||| ||||||||| || |||||| ||| || || | || | |||| Sbjct 104072 GTACAAGGCCTCGAATTCATCACCCCAGCAGTCGAACAGACCAGTCGCTTCA-TTAGGGC 104130 Query 244974 ACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGA 245033 | | ||||||||||||||| | | | || | || |||||| | || |||||||| | Sbjct 104131 AGAAAAGACTCCACTCGCCGTTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACA 104190 Query 245034 GGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCC 245092 ||| | || || || | | | || || | | ||| |||||||||| ||| Sbjct 104191 TGGCGTAAAACAGATCACGTGCACGATG-AAGTTCATTACCGTGATTCTTCCTCAAATCC 104249 Query 245093 AAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGA 245132 | || ||||| |||||| | ||||| ||||||| |||| Sbjct 104250 AGGAACTCAAATACGTCGGCATGCCACGGCTCCAAATAGA 104289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335894812800