Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq22 132 1e-25 seq78 123 6e-23 >seq22 Length=480975 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || |||||||||||| | || || |||||||| | || ||||| || || Sbjct 154264 TTCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAA 154323 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| |||||||||| | || || ||||| |||||||| || ||| |||||||| Sbjct 154324 AATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTTCACGTT 154383 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || ||| || ||| || || | |||||| ||||| ||||| || ||||| || Sbjct 154384 GTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCAC 154443 Query 288462 GAATATCTGCATTATGTTATT 288482 ||| ||||||||| | || || Sbjct 154444 GAAGATCTGCATTGTCTTCTT 154464 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || |||||||||||| | || || |||||||| | || ||||| || || Sbjct 171616 TTCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAA 171557 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| |||||||||| | || || ||||| |||||||| || ||| |||||||| Sbjct 171556 AATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTTCACGTT 171497 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || ||| || ||| || || | |||||| ||||| ||||| || ||||| || Sbjct 171496 GTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCAC 171437 Query 288462 GAATATCTGCATTATGTTATT 288482 ||| ||||||||| | || || Sbjct 171436 GAAGATCTGCATTGTCTTCTT 171416 >seq78 Length=145407 Score = 123 bits (136), Expect = 6e-23 Identities = 145/192 (76%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || ||||| | |||||||| || ||||| ||||| || || || |||||| Sbjct 113023 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 113082 Query 288346 AGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTT 288401 ||||| || || |||| || |||||||| || |||||||| ||| || || ||||| Sbjct 113083 AGACGTTGCTG---ATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGC-TTGACGTT 113138 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || | ||| || || |||||||| ||||| || || ||||| ||||| Sbjct 113139 GTCAATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGAC 113198 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 113199 GAAGATCTGCAT 113210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179650167989840