Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 2e-15 seq20 93.3 9e-14 >seq2 Length=1145976 Score = 98.7 bits (108), Expect = 2e-15 Identities = 269/398 (68%), Gaps = 18/398 (5%) Strand=Plus/Plus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| ||||||| ||| || ||| || | |||||||| ||| || | || || Sbjct 132186 TTCTGCTCCATCTTCTGGTTGAAGAAGCGTGGGCTCATGCCTGGTCTCAGTTTCTCGAAT 132245 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTT-ATGTATTCAAA 243464 || |||||||||| || || || | ||| | || | | |||| ||||| || || Sbjct 132246 GAACTCATCAGTCGTGATGAAGGGTTGCACTGTGACTTTGC-GTGCTTGATGTACTCCAA 132304 Query 243465 GCTCCAGAACAAGCTACC--ATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGA 243521 |||| |||||||| || | || ||| || | ||||||| || || || Sbjct 132305 GCTCGTCAACAAGCTTCCGGAGTC---ACGCGTGCACGAAATCATTGGTGACGCCGTCAC 132361 Query 243522 AAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTT-ATTGGCATGAACTC 243578 | || ||||||||| | || |||| || || | || |||||||||||||| Sbjct 132362 GATTGAGAAGGAATTCGTCAAGGATTCGCT---CCCTGTGGAATTGATTGGCATGAACTC 132418 Query 243579 TGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT-TTTCATCGCGCTTGGT- 243636 || ||| | |||||||| |||||| || || || | | ||| ||||||||| Sbjct 132419 GACGCTGATGTGTCAGTACATTGAATTCTGTGCTGATCGTTTGCTACAT-GCGCTTGGTG 132477 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 ||| || | |||||| |||||||||| |||| || ||||| | || || || || Sbjct 132478 TAT-CCAAGATCTACAACGCCAAGAACCCTTTTGACTGGATGGACATGATCTCACTGCAG 132536 Query 243697 GGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTA 243734 || || || || ||||| || |||||||| |||| || Sbjct 132537 GGCAAGACCAATTTCTTTGAGAAGCGTGTGGGTGAATA 132574 >seq20 Length=529036 Score = 93.3 bits (102), Expect = 9e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 333315 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 333374 || ||||||||||| || ||||||| ||||| ||||| || | || || || | | Sbjct 186504 TCCTTGTCTTCACCAGACTGGAAACGCCACTGGATGTACTGATTAGCAGTGATATCCAAA 186563 Query 333375 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 333434 || || || ||||| ||||| || ||||| |||||||| |||| |||||| || ||| Sbjct 186564 TGCTCTTCAATGTGATGGAAGGCGTGCTGCGCCACGTACGCAAAACGCATGGCAGGGTGC 186623 Query 333435 TTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTT 333494 ||||| || | ||| || | ||| | || || || | || ||| ||||| || Sbjct 186624 TTCCACACGGTACCGGACGTTGGTTCGACTTCACCAGTCAACATCTTGATGAGCGTCGAC 186683 Query 333495 TTTCCCGCACCATT 333508 || || ||||| || Sbjct 186684 TTACCAGCACCGTT 186697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102876043418000