Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq17 235 7e-57 seq2 163 3e-35 >seq17 Length=584494 Score = 235 bits (260), Expect = 7e-57 Identities = 1051/1644 (64%), Gaps = 42/1644 (3%) Strand=Plus/Plus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| || ||||| || || ||||||| || || | |||||||| | |||||| Sbjct 102971 GTAGTACATGCCGGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTCAACTT 103030 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 113721 | | || || | ||| | ||||| ||| ||| |||| || || Sbjct 103031 GCTCACCGTCGGGTCGGCGATGTGCACGTTCAGCGACTGGCTTTGGCAGATGTAGGCACC 103090 Query 113722 ACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 113781 |||||| || |||| ||| | ||| |||| ||||||||||||||| ||| |||| Sbjct 103091 ACGATCAGCTGCCAAATCTAACACGACCTTTTGCTTGATTTCCCACACTGTTTTGTACTT 103150 Query 113782 GTTCTTAATATCATCTGGGATATCCA-CG-ATATTTTGGATGGAGCCACCCGCCTTGACC 113839 | ||| || |||| || || | | || | ||||| | |||||||| | | || | Sbjct 103151 TTCCTTGATTGCATCAGGAAT--CGAGCGCACTTTTTGCACCGAGCCACC-GTCATG--C 103205 Query 113840 ATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGA 113896 | || | || || || || ||||| ||||| | |||| |||| || ||| Sbjct 103206 AAGATTTGGTTGCGCACCTCAGGTGTCCAGATACCAAGTTCGATGAGCTCCTTCATGAGG 103265 Query 113897 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTG 113956 | ||| ||||| | ||| ||||| ||||| ||| | || || |||| |||| Sbjct 103266 TACTTGTTGACGATCGTAAATTCACCAGCGAGCACGCGACGGTTGTACATGTTGGACGTG 103325 Query 113957 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGT 114016 ||||||||| | | ||||| || |||||||| || || || || || || |||||||| Sbjct 103326 AATGGCTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGC 103385 Query 114017 GCCATGAGAAGGCTGTTACGGAGACCCT-TTTCCCTAATGCGTTCCTTGAGGGCGTCCCA 114075 |||| | ||| ||| || | ||| | ||| | | | | | || | || |||| Sbjct 103386 GCCAACAACAGGGAGTTGCGCACACCATGTTTAGCGACTT-GAGCTTTCAATGCAGCCCA 103444 Query 114076 GTCGTAGTT----GAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGG 114131 || || || || | | | | ||||||||||||||||| ||| || | | Sbjct 103445 ATCCCAGAGACCAGATGTTGGAGTGACACC-CCACATATCAAACTGGAAGATGCCCTTGC 103503 Query 114132 AGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGG-AGCTC 114190 | || || ||||| | || || || ||||| | ||| || | ||| || | Sbjct 103504 TCACAGGGGAGCCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATAGAT- 103562 Query 114191 GCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCG 114250 || || | |||| | | |||| || ||||||||| | |||| | | || | Sbjct 103563 GCTTCCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGC 103622 Query 114251 TCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGG 114310 || || || | || | | |||||| |||| || | ||||| ||||| | Sbjct 103623 TCACTTTCGAAGGGGAACCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACCAATA 103682 Query 114311 CCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG---GGATAAAAATTC 114367 || | |||||||||| | |||||| ||| || || | ||||| | || Sbjct 103683 CCCACAGGGCGATGTCGTAGATTAGA---TCGCTTGGCTTCTGGGATCGGATAGTAGTTG 103739 Query 114368 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 114427 |||| || ||| | || |||||| |||| |||| ||| |||||||| | ||||| | Sbjct 103740 ATATCAATGACCTTGTTCAGATTTCTGGTCACAATCTTCGTGATTTCGTAGAGCTTCTGA 103799 Query 114428 TAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTA 114487 | | ||| | | | || |||| | || | || || || ||||||| || Sbjct 103800 AAGTTAAACACACCATTGTC------GACAAATTTGGACAGTGCAATGGACGCCAAGTTG 103853 Query 114488 CACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAAC 114545 ||||| | | || ||||| |||||||| | | || ||||| || || | Sbjct 103854 CACACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTACTGGAG 103913 Query 114546 TCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCA 114605 ||| ||||||||||| | ||||| ||||| || || ||||||||||| |||| Sbjct 103914 CG--AATAGTGCCCAAGTTTTGCTGATTCGACTTGCGATTGCATGCATCCTTGTAGAGCA 103971 Query 114606 TGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCG--GCGGC 114663 |||| || || || || || | || | | | ||| || ||| | || | ||| | Sbjct 103972 TGTAGGGTGTGCCGGTTTCGATCTGAGCGTCCAAAATGGCGAACCACA-ATTGTTGCGCC 104030 Query 114664 TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 114723 | | | || | ||| |||| | |||||||| ||||| | ||| || || || Sbjct 104031 TTG-ATGGTCTTGCGGGCCAAGCCCTGGGCTTCGTACTTGGTGTACAAGGCCTCGAATTC 104089 Query 114724 TTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACC 114783 |||||| | || | || || | || | || |||||||| ||| ||| | || Sbjct 104090 ATCACCCCAGCAGTCGAACAGACCAGTCGCTTCATTAGGGCAGAAAAGACTCCACTCGCC 104149 Query 114784 ACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCG 114843 | || |||||||||||||| | ||||||||||| | || | || ||||| || Sbjct 104150 GTTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAAACAGATCACG 104209 Query 114844 ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 114903 ||| ||||| || ||||| | ||| |||| || || | | || || Sbjct 104210 TGCACGATGAAGTTCATTACCGTGATTCTTCCTCAAATCCAGGAACTCAAATACGTCGGC 104269 Query 114904 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACCAGCCTGGTTTAC 114960 |||||||| |||| || | || | |||||||| || | |||| | || | || Sbjct 104270 ATGCCACGGCTCCAAATAGATTGCAAACGACCCCTTGCGCTTGCCACCACCTTGATCAAC 104329 Query 114961 ATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATT 115020 || | || ||| |||| || || || | ||| || | ||||| | || |||||| Sbjct 104330 GTAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGACGTGCCATT 104389 Query 115021 TGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCC 115080 ||| || || || || | || | | | || ||| || || |||||||| Sbjct 104390 TGTACCACGGATGTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGATGCCGATACCCCC 104449 Query 115081 TGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTC 115140 ||||||||| ||||| ||||| | | ||||| || |||| || || || || || || Sbjct 104450 TGCCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCAATAGAATC 104509 Query 115141 ACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAA 115200 | | | || | | ||| || |||| |||||||| ||||||||| ||||| || Sbjct 104510 GTCTTGCATGGCCAATAAGAAACACGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAA 104569 Query 115201 GAGGGTTGGTGTCGCGTGGATGAA 115224 || |||||||| ||||| |||| Sbjct 104570 CAGTGTTGGTGTGGCGTGCGTGAA 104593 >seq2 Length=1145976 Score = 163 bits (180), Expect = 3e-35 Identities = 399/587 (68%), Gaps = 31/587 (5%) Strand=Plus/Minus Query 125748 CCAGC-TTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||| ||| ||| || || || |||||||| ||||| || ||||| || | || | Sbjct 132586 CCAGCCTTGGAGTATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAG 132527 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 125866 || | ||||| | ||||| |||||||| | ||| | || | | || |||| | Sbjct 132526 ATCATGTCCATCCAGTCAAAAGGGTTCTTGGCGTTGTAGATCTTGGATACACCAAGCGCA 132467 Query 125867 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 125926 | || | |||||| | | | |||||||||| | ||||| | |||||||| || Sbjct 132466 TGTAGCAAACGATCAGCACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCATGCCA 132407 Query 125927 ATGAGGTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCG 125985 || | | ||| ||||||| ||| || ||| |||||||||| ||||| || | Sbjct 132406 ATCAATTCCACA-GGGAGCGAATCCTTGACGAATTCCTTCTCAATCGTGACGGCGTCACC 132348 Query 125986 CACGATGGCGTGAATG-GTGTCCACCCCAGGTCTATTG-CGCAAAGTCTTGAAG-AGTTC 126042 | ||| |||| | | ||| | | || | | ||| || || |||| || | || Sbjct 132347 AATGATTTCGTGCACGCGTGACTCCGGAAGCT-TGTTGACG---AG-CTTGGAGTACATC 132293 Query 126043 ---CACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCA 126099 |||| |||| || ||| | || || ||||| |||||||||||||||||| | Sbjct 132292 AAGCACG-CAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACT 132234 Query 126100 CAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAA 126159 || || |||||||| || ||||||||||||||||| || | || || |||||||| || Sbjct 132233 GAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAA 132174 Query 126160 GAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG----AGCGCGACT 126215 |||||||||||| ||| ||| || || || | || |||||| ||| |||||| Sbjct 132173 GAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGCG--- 132117 Query 126216 TTGTGTCAAACCACTTCATCGCCC-ACTGCGCCTTTTTCTCGATACACGGGACGGTCTGG 126274 | ||| ||||||||| |||| |||| ||||| || | || |||| ||| | | Sbjct 132116 -CGAGTCGCACCACTTCAATGCCCAACTG-GCCTTCTTGGTCACGCATGGGATGGTTTCG 132059 Query 126275 ATCGC---TTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 126318 || || | ||| | |||||| || | || ||||||||||| Sbjct 132058 ATGGCACGTAGCAAGTGGTCCTTC---TCGGTCGGGTCTTTGATGTA 132015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597351509262400