Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq78 100 3e-16 seq22 100 3e-16 seq17 93.3 4e-14 seq113 84.2 2e-11 >seq78 Length=145407 Score = 100 bits (110), Expect = 3e-16 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 ||||| |||||||| || | | ||||| | ||||| | |||||||| ||| | || Sbjct 113023 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 113082 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || || ||||| || |||||||||||||| || || || || |||||||| || || Sbjct 113083 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCA 113142 Query 64376 A--CTGTATCACCG--GCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 | |||| ||| | ||||| || | || | ||||||||| || | |||||| || Sbjct 113143 ATGCTGT----CCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGAC 113198 Query 64432 GAAAATTTGCATTTTA 64447 ||| || ||||| ||| Sbjct 113199 GAAGATCTGCATCTTA 113214 >seq22 Length=480975 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| | || | |||||| || ||||| ||||| || || Sbjct 153772 ACCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCT 153831 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| | |||||| || || |||| | ||||| || || ||||| Sbjct 153832 CAACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCAGGAGG 153891 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| ||||||||||| ||| || | | || || ||||| Sbjct 153892 AATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCAC 153951 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | || || || ||||| || || || || || ||||| Sbjct 153952 ATCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 153999 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| | || | |||||||| || ||||| || || || Sbjct 154228 ACCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCT 154287 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || ||||||| |||||||| || ||| |||| | ||||| || || ||||| Sbjct 154288 CAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGG 154347 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || || ||||| || || | | || | || || Sbjct 154348 AATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGAC 154407 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | |||||||||||| | || || ||||| || |||||| Sbjct 154408 GTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCATT 154456 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| | || | |||||||| || ||||| || || || Sbjct 171652 ACCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCT 171593 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || ||||||| |||||||| || ||| |||| | ||||| || || ||||| Sbjct 171592 CAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGG 171533 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || || ||||| || || | | || | || || Sbjct 171532 AATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGAC 171473 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | |||||||||||| | || || ||||| || |||||| Sbjct 171472 GTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCATT 171424 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || ||||||||||| || | ||||| | || ||||||||||| || Sbjct 154031 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGCTTTCCA 154090 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| || ||||| || ||||| || ||||| || ||||| || ||||| || Sbjct 154091 GCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTTG 154150 Query 64367 ACA 64369 ||| Sbjct 154151 ACA 154153 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || ||||||||||| || | ||||| | || ||||||||||| || Sbjct 171849 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGCTTTCCA 171790 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| || ||||| || ||||| || ||||| || ||||| || ||||| || Sbjct 171789 GCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTTG 171730 Query 64367 ACA 64369 ||| Sbjct 171729 ACA 171727 >seq17 Length=584494 Score = 93.3 bits (102), Expect = 4e-14 Identities = 372/571 (65%), Gaps = 25/571 (4%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 |||||||||||||| || || | ||| || |||| | || | || |||| Sbjct 103842 GACGCCAAGTTGCACACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCAC 103901 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 || |||||| | ||||| ||||||| ||||| ||||||||| ||| |||||||| || Sbjct 103902 AAGTTACTGGAGCGAATAGTGCCCAAGTTTTGCTGATTCGACTTGCGATTGCATGCATCC 103961 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGA 154766 ||||| | ||||| || ||||| ||||| | || | || | ||| ||||| || | Sbjct 103962 TTGTAGAGCATGTAGGGTGTGCCGGTTTCGATCTGAGCGTCCAAAAT--GGCGAACCACA 104019 Query 154767 CT--TCGCGCCTCAA----CTTGACAAGTAAATCGATTTTCGCTCTCATA-TTGTTCGTA 154819 | | |||||| | |||| | | || | | ||| || || ||| | ||| Sbjct 104020 ATTGTTGCGCCTTGATGGTCTTG-CGGGCCAA--GCCCTGGGCT-TCGTACTTGGT-GTA 104074 Query 154820 CAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACC-GGGACAGCGGTCGGGACACA 154878 || || || || || | ||| ||| ||| | | | | ||| || Sbjct 104075 CAAGGCCTCGAATTCATCACCCCAGCAGTCGAACAGACCAGTCGCTTCATTAGGG---CA 104131 Query 154879 TCAATGA--CCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAA 154936 || || |||| |||| || || || ||||| |||||||| || | ||||| Sbjct 104132 GAAAAGACTCCACTCGCCGTTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACAT 104191 Query 154937 AGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTC-GCTTTAAATTCA 154995 ||||| |||| |||||| || | |||| || || ||| | | |||| || Sbjct 104192 GGCGTAAAACAGATCACGTGCACGATGAAGTTCA-TTACCGTGATTCTTCCTCAAATCCA 104250 Query 154996 AAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTT 155055 || ||| ||| |||||| ||||||||||| ||||| | || | || || ||||| | Sbjct 104251 GGAACTCAAATACGTCGGCATGCCACGGCTCCAAATAGATTGCAAACGACCCCTTGCGCT 104310 Query 155056 T---TCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCA 155112 | || |||||||| |||| ||| || | |||| |||| ||||||| || | | Sbjct 104311 TGCCACCACCTTGATCAACGTAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAA 104370 Query 155113 CGCCGCTGGCCGTGCCGTTGGTGCCACGTAT 155143 ||| ||| |||||| || || ||||| || Sbjct 104371 TACCGTTGGACGTGCCATTTGTACCACGGAT 104401 >seq113 Length=36633 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATT 64339 ||||| | ||||||||||||||||| ||| | || || |||||||| || || |||||| Sbjct 6068 GTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGGGGAATT 6127 Query 64340 CCTTCTTTTTCTTGTATTTTTTGCTTTAC 64368 ||||| || || || ||||| ||||| || Sbjct 6128 CCTTCCTTGTCCTGAATTTTCTGCTTGAC 6156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643051243200