Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq17 235 5e-57 >seq17 Length=584494 Score = 235 bits (260), Expect = 5e-57 Identities = 868/1349 (64%), Gaps = 37/1349 (3%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| || || ||||| ||||| || || || |||||| |||||||||||||| | Sbjct 104584 GCCACACCAACACTGTTTAACGCAGGTACACCACGGCCACAACTGTCTTCGTGTTTCTTA 104525 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | | | ||| || || || |||| ||||| |||||| | || || | Sbjct 104524 TTGGCCATGCAAGACGATTCTATTGAGGGCATTTACGACACTCTCAAGCAATGCGCATGC 104465 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || ||||| ||||| ||||| | ||| || | || || | | | | Sbjct 104464 ATCTCCAAGTGGGCAGGGGGTATCGGCATCAGCATGCACAACATTCGCGCGACGAATAGC 104405 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||||| ||||| |||||||| |||||||| | || |||||| | || || ||||| Sbjct 104404 TACATCCGTGGTACAAATGGCACGTCCAACGGTATTGTGCCTATGTTGCGTGTGTTCAAT 104345 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || | || || ||||| || || |||||||| | | | ||||| || || || ||||| Sbjct 104344 GACACTGCTCGTTACGTTGATCAAGGTGGTGGCAAGCGCAAGGGGTCGTTTGCAATCTAT 104285 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | ||||| ||||| || ||||| | ||| | || || | ||||| ||||| || Sbjct 104284 TTGGAGCCGTGGCATGCCGACGTATTTGAGTTCCTGGATTTGAGGAAGAATCACGGTAAT 104225 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | | || | || || || ||||| | ||| | ||||| | || ||||| Sbjct 104224 GAACTTCATCGTGCACGTGATCTGTTTTACGCCATGTGGATCCCAGATTTGTTCATGAAG 104165 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || || || ||| || ||||||||||| || || |||||| | || |||| | Sbjct 104164 CGTGTGGAAGCCAACGGCGAGTGGAGTCTTTTCTGCCCTAATGAAGCGACTGGTCTGTTC 104105 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCC 94431 ||| || || || || | |||||| | |||||| | |||||| |||| Sbjct 104104 GACTGCTGGGGTGATGAATTCGAGGCCTTGTACACCAAGTACGAAGCCCAGGGCTTGGCC 104045 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | ||| || | || | ||||| || |||||| ||| | || || Sbjct 104044 CGCAAGACCATCAAGGCGCAACAATTGTGGTTCGCCATTTTGGACGCTCAGATCGAAACC 103985 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 || || |||||||| | | |||||| | ||| |||||| || ||||| || | Sbjct 103984 GGCACACCCTACATGCTCTACAAGGATGCATGCAATCGCAAGTCGAATCAGCAAAACTT- 103926 Query 94552 GGGGTGATCAAGAGCTC---GAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || | | |||| || ||||| ||| | |||||||| || || |||| Sbjct 103925 --GGGCACTATTCGCTCCAGTAACTTGTGCTGTGAGGTCGTCGAGTACACATCCAAGGAC 103868 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 || | || ||||| ||| ||| ||||| ||||||| || || ||| Sbjct 103867 GAAGTCGCGGTGTGCAACTTGGCGTCCATTGCACTGTCCAAATTTGT-CGA--------- 103818 Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCT-TGTGAACTTCGCGGGAAGGATG-GTCT 94726 | || | ||| | | || |||| | ||| | | |||| || | | Sbjct 103817 -----CAATGGTGTGTTTAACTTTCAGAAGCTCTACGAAAT---CACGAAGATTGTGACC 103766 Query 94727 TG-AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCA 94785 | || ||||||| ||| || || | |||| ||| || |||| || || || || Sbjct 103765 AGAAATCTGAACAAGGTCATTGATATCAACTACTATCCGATCCCAGAAGCCAAGCGATCT 103706 Query 94786 AACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATG 94845 || || ||||| || | || || || || || || || || || ||| | | | Sbjct 103705 AATCTACGACATCGCCCTGTGGGTATTGGTGTGCAAGGGTTGGCTGATGCGTTTATTCTC 103646 Query 94846 ATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGC 94905 ||| | | |||| ||| || | ||| | ||||| | |||| || |||| Sbjct 103645 ATGGGGTTCCCCTTCGAAAGTGAGCAAGCGCGAGAATTGAACAAGCACATTTTTGAAACG 103586 Query 94906 ATTTATTACGGGGCCATGAAACAATCCGT-CCACTTGGCCAGATCGGACGGCGGGCCACA 94964 | || || || |||||| || ||| | ||||| || | ||| || || | Sbjct 103585 CTGTACTATGGAGCCATGGAAGCATCTATGGAACTTG--CAAA--GGAGTATGGCCCGTA 103530 Query 94965 CGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCTGGGGTG 95023 ||| | || || || |||| || | ||||||| || ||||| || | ||||||| Sbjct 103529 TGAAAC-TTACGAGGGCTCCCCTGTGAGCAAGGGCATCTTCCAGTTTGATATGTGGGGTG 103471 Query 95024 TGAAGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACG 95080 | | | | || ||||| | || |||| || | ||| | || ||||| | Sbjct 103470 TCACTCCAACATCTGGTCTCTGGGATTGGGCTGCATTGAAAGCTCAAGTCGCTAAACATG 103411 Query 95081 GTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTG 95140 ||||| ||| | ||| | |||| |||||||| ||||| || || || |||||| | | Sbjct 103410 GTGTGCGCAACTCCCTGTTGTTGGCGCCCATGCCAACGGCGTCGACTGCTCAGATCTTGG 103351 Query 95141 GCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCG 95200 |||| || || || | || || ||||| |||||| |||||||| | || |||||||| | Sbjct 103350 GCAATAATGAATCCATTGAGCCATTCACGTCCAACATGTACAACCGTCGCGTGCTCGCTG 103291 Query 95201 GGGAATTCCCCGTCATCAACAAGCACCTC 95229 | ||||| | || |||||||| ||||| Sbjct 103290 GTGAATTTACGATCGTCAACAAGTACCTC 103262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721468468800