Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq22 102 8e-17 seq17 100 3e-16 seq113 91.5 1e-13 >seq22 Length=480975 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||||| || | || || || ||||||||||||||||| | | Sbjct 153545 CCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTC 153604 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| || || || | || | || || ||||| ||||| Sbjct 153605 AAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGA 153664 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| |||||||| | |||| || | | ||||| | || || Sbjct 153665 ATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTG-TCAATAGAGTCCGAAGGTTCCAC 153723 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| |||| || || || || |||||||| Sbjct 153724 ATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 153771 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||||| || | || || || ||||||||||||||||| | | Sbjct 172107 CCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTC 172048 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| || || || | || | || || ||||| ||||| Sbjct 172047 AAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGA 171988 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| |||||||| | |||| || | | ||||| | || || Sbjct 171987 ATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTG-TCAATAGAGTCCGAAGGTTCCAC 171929 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| |||| || || || || |||||||| Sbjct 171928 ATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 171881 >seq17 Length=584494 Score = 100 bits (110), Expect = 3e-16 Identities = 299/455 (66%), Gaps = 10/455 (2%) Strand=Plus/Plus Query 145759 CGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTAT---GCTC 145815 |||| ||||||||||||||||| || | || ||||| ||||||||| || || Sbjct 102966 CGCATGTAGTACATGCCGGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTC 103025 Query 145816 GACATGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATG 145875 || || | ||| || ||||||| || || || || ||||| || ||| Sbjct 103026 AACTTGCTC---ACCGTCGGGTCGGCGATGTGCACGTTCAGCGACTGGCTTTGGCAGATG 103082 Query 145876 AAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTT 145935 | | | | || || || |||| |||| || | |||| || |||||||| | ||| Sbjct 103083 TAGGCACCACGATCAGCTGCCAAATCTAACACGACCTTTTGCTTGATTTCCCACACTGTT 103142 Query 145936 TTAAAGAGATCCTTGACGTGC-TGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTC 145994 || | ||||||| ||| | || || | | || ||||| || ||| || Sbjct 103143 TTGTACTTTTCCTTGA-TTGCATCAGGAATCGAGCGCACTTTTTGCACCGAGCCACCGTC 103201 Query 145995 GGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAG-TCTACGAGGGCCTTGA 146053 ||| |||| |||||||| || || || | || |||| || | ||| |||| | Sbjct 103202 ATGCAAGATTTGGTTGCGCACCTCAGGTGTCCAGAT-ACCAAGTTCGATGAGCTCCTTCA 103260 Query 146054 TGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGC 146113 |||| |||| |||||| | | ||| || || ||||| ||||| | |||| |||| Sbjct 103261 TGAGGTACTTGTTGACGATCGTAAATTCACCAGCGAGCACGCGACGGTTGTACATGTTGG 103320 Query 146114 TGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCA 146173 ||||| ||||| | || || || || || | ||||| || |||| || || |||| Sbjct 103321 ACGTGAATGGCTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCA 103380 Query 146174 TGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGT 146208 || ||||| || || ||||| | ||| || ||| Sbjct 103381 TGGGCGCCAACAACAGGGAGTTGCGCACACCATGT 103415 >seq113 Length=36633 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| ||| || ||||| || ||||| |||||| ||||||||||| || || Sbjct 6064 CAACGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGGGG 6123 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || ||||||||| ||||||||||||| |||| || | | ||||| | ||||| Sbjct 6124 AATTCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTG-TCAATCGAGTCCGAAGGCTCGA 6182 Query 127065 CTTCGACGGTCACCGTTTTGCC 127086 | |||| || | ||||| || Sbjct 6183 CGTCGAGCGTGATGGTTTTACC 6204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499135747200