Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq17 250 3e-61 seq2 140 4e-28 >seq17 Length=584494 Score = 250 bits (276), Expect = 3e-61 Identities = 1060/1648 (64%), Gaps = 50/1648 (3%) Strand=Plus/Plus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| || ||||| || || ||||||| || || | ||||| || | |||||| Sbjct 102971 GTAGTACATGCCGGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTCAACTT 103030 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 | | || || | ||| | ||||| ||| ||| |||| || || Sbjct 103031 GCTCACCGTCGGGTCGGCGATGTGCACGTTCAGCGACTGGCTTTGGCAGATGTAGGCACC 103090 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 ||||| || |||| ||| | ||| |||| ||||||||||||||| ||| |||| Sbjct 103091 ACGATCAGCTGCCAAATCTAACACGACCTTTTGCTTGATTTCCCACACTGTTTTGTACTT 103150 Query 115743 GTTCTTAATATCATCTGGGATATCCA-CG-ATATTTTGGATAGAGCCACCTGCCTTGACC 115800 | ||| || |||| || || | | || | ||||| | |||||||| | | || | Sbjct 103151 TTCCTTGATTGCATCAGGAAT--CGAGCGCACTTTTTGCACCGAGCCACC-GTCATG--C 103205 Query 115801 ATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGG 115857 | || | || || || || ||||| ||||| | |||| |||| || |||| Sbjct 103206 AAGATTTGGTTGCGCACCTCAGGTGTCCAGATACCAAGTTCGATGAGCTCCTTCATGAGG 103265 Query 115858 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTG 115917 | ||| ||||| | ||| ||||| ||||| ||| | || ||||||| |||| Sbjct 103266 TACTTGTTGACGATCGTAAATTCACCAGCGAGCACGCGACGGTTGTACATGTTGGACGTG 103325 Query 115918 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 115977 ||||||||| | | ||||| || |||||||| || || || || || || |||||||| Sbjct 103326 AATGGCTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGC 103385 Query 115978 GCCATGAGAAGGCTGTTGCGGAGACCC-----ACCCCCCTAATGCGTTCCTTGAGGGCG- 116031 |||| | ||| |||||| | ||| | | | | | || ||| || | | Sbjct 103386 GCCAACAACAGGGAGTTGCGCACACCATGTTTAGCGACTTGA-GCTTTCAATGCAGCCCA 103444 Query 116032 -TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTG 116090 |||||| | || || | | | | |||||||||||||||||| ||| || | Sbjct 103445 ATCCCAGAG--ACCAGATGTTGGAGTGACAC-CCCACATATCAAACTGGAAGATGCCCTT 103501 Query 116091 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGG-AGC 116149 | | | || || ||||| | || ||||| ||||| | ||| || | ||| || Sbjct 103502 GCTCACAGGGGAGCCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATAGA 103561 Query 116150 TCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCT 116209 | || || | |||| | | |||| || ||||||||| | |||| | | || | Sbjct 103562 T-GCTTCCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTT 103620 Query 116210 CGTCGGAATCAAACGCGAGACGGCACAA-AATAAATACATCCGCGAGACCTTGGACACCG 116268 || || || | || || || | |||||| |||| || | ||||| ||||| Sbjct 103621 GCTCACTTTCGAAGGGGA-ACCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACCA 103679 Query 116269 AGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG---GGATAAAAA 116325 | || | |||||||||| | |||||| ||| || || | ||||| | Sbjct 103680 ATACCCACAGGGCGATGTCGTAGATTAGA---TCGCTTGGCTTCTGGGATCGGATAGTAG 103736 Query 116326 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 116385 || |||| || ||| | || |||||| |||| |||| ||| |||||||| | ||||| Sbjct 103737 TTGATATCAATGACCTTGTTCAGATTTCTGGTCACAATCTTCGTGATTTCGTAGAGCTTC 103796 Query 116386 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 116445 | | | ||| | | | || |||| | || | || || || ||||||| Sbjct 103797 TGAAAGTTAAACACACCATTGTC------GACAAATTTGGACAGTGCAATGGACGCCAAG 103850 Query 116446 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TG 116503 || ||||| | | || ||||| |||||||| | | || ||||| || || Sbjct 103851 TTGCACACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTACTG 103910 Query 116504 AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGA 116563 | ||| ||||||||||| | ||||| ||||| || || ||||||||||||| Sbjct 103911 GAGCG--AATAGTGCCCAAGTTTTGCTGATTCGACTTGCGATTGCATGCATCCTTGTAGA 103968 Query 116564 GCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCG--GC 116621 |||| || || || || || || | || | | | ||| || ||| | || | || Sbjct 103969 GCATGTAGGGTGTGCCGGTTTCGATCTGAGCGTCCAAAATGGCGAACCACA-ATTGTTGC 104027 Query 116622 GGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAA 116681 | || | | || | ||| |||| | |||||||| ||||| | |||||| || Sbjct 104028 GCCTTG-ATGGTCTTGCGGGCCAAGCCCTGGGCTTCGTACTTGGTGTACAAGGCCTCGAA 104086 Query 116682 CTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATT 116740 || |||||| |||| || | || || | || | || || ||||| ||| ||| | Sbjct 104087 TTCATCACCC-CAGCAGTCGAACAGACCAGTCGCTTCATTAGGGCAGAAAAGACTCCACT 104145 Query 116741 GACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGAT 116800 || | || || ||||||||||| | ||||||||||| | || | || |||| Sbjct 104146 CGCCGTTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAAACAGAT 104205 Query 116801 CCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATAT 116860 | || ||| ||||| || ||||| | ||| |||| || || | | | Sbjct 104206 CACGTGCACGATGAAGTTCATTACCGTGATTCTTCCTCAAATCCAGGAACTCAAATACGT 104265 Query 116861 CCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGA---CGACCAGCCTGGT 116917 | || |||||||| |||| || | || | ||||||||||| | |||| | || | Sbjct 104266 CGGCATGCCACGGCTCCAAATAGATTGCAAACGACCCCTTGCGCTTGCCACCACCTTGAT 104325 Query 116918 TTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGC 116977 || || | || || | || || || || | ||| || | ||||| | || || Sbjct 104326 CAACGTAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGACGTGC 104385 Query 116978 CATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATAC 117037 ||||||| || || || || | || | | | ||| ||| || || |||| Sbjct 104386 CATTTGTACCACGGATGTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGATGCCGATAC 104445 Query 117038 CCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCG 117097 ||||||||||||| ||||| |||||| | | ||||| || |||| || || || || | Sbjct 104446 CCCCTGCCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCAATAG 104505 Query 117098 AGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGT 117157 | || | | | || | | ||| || |||| |||||||| ||||||||| |||| Sbjct 104506 AATCGTCTTGCATGGCCAATAAGAAACACGAAGACAGTTGTGGCCGTGGTGTACCTGCGT 104565 Query 117158 TGAAGAGGGTTGGTGTCGCGTGGATGAA 117185 | || || |||||||| ||||| |||| Sbjct 104566 TAAACAGTGTTGGTGTGGCGTGCGTGAA 104593 >seq2 Length=1145976 Score = 140 bits (154), Expect = 4e-28 Identities = 393/583 (67%), Gaps = 23/583 (4%) Strand=Plus/Minus Query 127221 CCAGC-TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||| ||| ||| || || || |||||||| ||||| || ||||| || | || | Sbjct 132586 CCAGCCTTGGAGTATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAG 132527 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 127339 || | ||||| | ||||| |||||||| | ||| | || | | || |||| | Sbjct 132526 ATCATGTCCATCCAGTCAAAAGGGTTCTTGGCGTTGTAGATCTTGGATACACCAAGCGCA 132467 Query 127340 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 127399 | || | |||||| | | | |||||||||| | ||||| | |||||||| || Sbjct 132466 TGTAGCAAACGATCAGCACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCATGCCA 132407 Query 127400 ATGAGGTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCG 127458 || | | ||| ||||||| ||| || ||| |||||||||| || || || | Sbjct 132406 ATCAATTCCACA-GGGAGCGAATCCTTGACGAATTCCTTCTCAATCGTGACGGCGTCACC 132348 Query 127459 TACGATGGCGTGAATA-GTGTCCACCCCAGGTCTATTG-CGTAAAGTCTTGAAG-AGTTC 127515 | ||| |||| | ||| | | || | | ||| || || |||| || | || Sbjct 132347 AATGATTTCGTGCACGCGTGACTCCGGAAGCT-TGTTGACG---AG-CTTGGAGTACATC 132293 Query 127516 CA-CA-GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCAC 127573 | || ||||| || ||| | || || ||||| |||||||||||||||||| | Sbjct 132292 AAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTG 132233 Query 127574 AGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAG 127633 ||||| |||||||| || ||||||||||||||||| || | || || || || || ||| Sbjct 132232 AGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAG 132173 Query 127634 AAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG-AGCGGGACTTTGT 127692 ||||| ||||| ||| ||| || || || | || || ||| ||| ||| | | | Sbjct 132172 AAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGC-GCGA 132114 Query 127693 ATCAAACCACTTCATCGCCC-ACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCG 127751 || ||||||||| |||| |||| ||||| || | ||||||| ||| | ||| | Sbjct 132113 GTCGCACCACTTCAATGCCCAACTG-GCCTTCTTGGTCACGCATGGGATGGTTTCGATGG 132055 Query 127752 C---TTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 127791 | | ||| | |||||| || | || ||||||||||| Sbjct 132054 CACGTAGCAAGTGGTCCTTC---TCGGTCGGGTCTTTGATGTA 132015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505052724800