Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq17 159 6e-34 seq2 127 3e-24 >seq17 Length=584494 Score = 159 bits (176), Expect = 6e-34 Identities = 455/686 (66%), Gaps = 19/686 (3%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTACAT 203895 |||||| ||||| ||||||||||| | |||| || | | | || |||||||| Sbjct 102923 CTTGTCGACCGTAAACTGAATGGCAT---CGGCCTTCGGTCGCCCACGCATGTAGTACAT 102979 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||||||||| || || || |||| |||| | |||||| || | || |||||||| | Sbjct 102980 GCCGGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTCAACTTGCTCACCGT 103039 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| ||||| | |||||| |||||||||||| |||| |||| || ||||| | Sbjct 103040 CGGGTCGGCGATGTGCACGTTCAGCGACTGGCTTTGGCAGATG-TAGGCACCACGATCAG 103098 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | |||| || | | | ||| ||| || |||||||| || ||| || || || Sbjct 103099 CTGCCAAATCTAACACGACCTTTTGCTTGATTTCCCACACTGTTTTGTACTTTTCCTTGA 103158 Query 204075 TGTGTTGAGGCACATC-TTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 | | ||| ||| | ||| | || | |||||| ||| || | | | Sbjct 103159 TTGCATCAGG--AATCGAGCGCACTTTTTGCACCGAGCCACCGTCATGCAAGATTTGGTT 103216 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | ||| ||| || || | ||| |||||| || |||| ||||| Sbjct 103217 GCGCACCTCAGGTGTCCAGATACCAAGTTCGATGAGCTCCTTCATGAGGTACTTGTTGAC 103276 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 |||| ||| || || | ||||| | ||| || ||| |||| |||||||| || | Sbjct 103277 GATCGTAAATTCACCAGCGAGCACGCGACGGTTGTACATGTTGGACGTGAATGGCTCAAT 103336 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 | || || ||||| || |||||||| || ||||| |||||||| |||| | ||| Sbjct 103337 GGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGCGCCAACAACAG 103396 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCTGCGC-TTCAGAGAGGTCCAGTC---GTGCA 204368 ||||||||||||||| | ||| || | || || |||| | | ||| || | | Sbjct 103397 GGAGTTGCGCACACCATGTTTAGCGA-CTTGAGCTTTCAATGCAGCCCAATCCCAGAGAC 103455 Query 204369 TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428 | | || | || |||||||| || ||||| |||||||| | || || ||| || Sbjct 103456 CAGATGTTGGAGTGACACCCCACATATCAAACTGGAAGATGCCCTTGCTCACAGGGGAGC 103515 Query 204429 CCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCA-CGAGGCGGCCATGGCG 204487 ||| ||| || ||| || || ||| | ||| || || || || || ||||||| Sbjct 103516 CCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAG-TTCCATAGATGCTTCCATGGCT 103574 Query 204488 TGATAGTACATGGTCTCAAAGATCTG 204513 |||||||| || ||||| || || Sbjct 103575 CCATAGTACAGCGTTTCAAAAATGTG 103600 >seq2 Length=1145976 Score = 127 bits (140), Expect = 3e-24 Identities = 549/848 (65%), Gaps = 34/848 (4%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 |||| |||||| || || ||||||||||||| || || || ||||| | | || Sbjct 132566 CACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAGATCATGTCCATCCAGTCAAA 132507 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 |||||||| ||| ||| ||| | | || || || ||||| | || || || Sbjct 132506 AGGGTTCTTGGCGTTGTAGATCTTGGATACACCAAGCGCATGTAGCAAACGATCAGC-AC 132448 Query 159763 A-AATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 | ||||| ||||| ||||||| || |||| || || | || || ||||||| Sbjct 132447 AGAATTCAATGTACTGACACATCAGCGTCGAGTTCATGCCAATCAATTCCACAGGGAGCG 132388 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCAC-AATC--TGCGAGACAC 159878 ||| | || |||||||||||| ||| || ||||| ||| | || | ||| Sbjct 132387 AATCCTTGACGAATTCCTTCTCAATCGTGACGGC----GTCACCAATGATTTCGTG-CAC 132333 Query 159879 GTTCGT-ACCCCGG---CTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCG 159934 | ||| || |||| |||| | | | | | ||| | |||||||||||| Sbjct 132332 G--CGTGACTCCGGAAGCTTGTTGACGAGCTTGGAGT---ACATCAAGCACGCAAAGTCA 132278 Query 159935 CAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATC 159994 ||||||| || || || ||| ||||| || || || | |||| || ||||||| | Sbjct 132277 CAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCAGGCATGAGC 132218 Query 159995 CCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCAC 160053 |||||| || | ||| || |||| ||| ||| | | | |||| ||||| ||||| || Sbjct 132217 CCACGCTTCTTCAACCAGAAGATGG-AGCAGAAGGAACCCGAAAAGAAGATTCCCTCGAC 132159 Query 160054 GGCCGCAAACGCCACGAGCCTCTCACCAAA---AGAGGCGTTGGTGTCATGGGTCCACCT 160110 |||||||| |||| | || ||| || | || ||| | ||| | |||| | Sbjct 132158 AGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGCGCGAGTC---GCACCACTT 132102 Query 160111 TTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCT 160170 ||||| |||||||| | | ||| || ||| |||| ||| | ||| Sbjct 132101 CAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCGATGGCACGTAGCAAGTG 132042 Query 160171 GTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTG 160230 ||||| ||| || || ||||| || |||||| |||||||| ||| | ||| Sbjct 132041 GTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAAGCGAGTACACTTCGGAGTG 131982 Query 160231 CACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACCT 160289 | ||||| ||||| ||||| || ||| || | ||||| ||| || ||||| | Sbjct 131981 AATGTTTTCAATGGCGATCTGGAATCCGTAAAAGCAGCGCGCCT-CAGGCACTTGCACTT 131923 Query 160290 CCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAG 160349 | |||| | | || || | || || | ||| ||| ||| |||||||| | Sbjct 131922 CACTACTGAAATTCATCGCAAGGTTTTCGTTCACAATCCCATCGCTGGCAGCAAAGAACG 131863 Query 160350 CCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTC-TCTTTTCCCAGTGTGTC 160408 |||| ||||| |||||| | ||| |||| | ||| |||| |||||| || Sbjct 131862 CCAAGACGTGCTTGATGAAGAAGCGTTCG---TTGTCG-GTCATCTTGACCCAGTCCTTC 131807 Query 160409 ACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTAC 160468 | ||| || ||||||| | ||||| ||| ||||| || | ||| | |||||| Sbjct 131806 AGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTCAGCCTTCTTGTAC 131747 Query 160469 ATGGCCCA 160476 |||||||| Sbjct 131746 ATGGCCCA 131739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795152416956800