Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq22 104 3e-17 >seq22 Length=480975 Score = 104 bits (114), Expect = 3e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 || ||||| || | | ||| | ||||| |||||||| |||||||| |||||||| Sbjct 153539 TAGTTGCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAA 153598 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 || | ||| || |||| || |||||||| || || || || | || || || || Sbjct 153599 TCACTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCT 153658 Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC-GTGTCGCTCGA 46539 | || | | ||||||||| |||||||| ||| | ||| | || | ||| | Sbjct 153659 GGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCAATAGAGTCCGAAGG 153717 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||||| |||||||| ||||| |||| ||| || || ||||| ||||| Sbjct 153718 TTCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 153771 Score = 104 bits (114), Expect = 3e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 || ||||| || | | ||| | ||||| |||||||| |||||||| |||||||| Sbjct 172113 TAGTTGCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAA 172054 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 || | ||| || |||| || |||||||| || || || || | || || || || Sbjct 172053 TCACTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCT 171994 Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC-GTGTCGCTCGA 46539 | || | | ||||||||| |||||||| ||| | ||| | || | ||| | Sbjct 171993 GGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCAATAGAGTCCGAAGG 171935 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||||| |||||||| ||||| |||| ||| || || ||||| ||||| Sbjct 171934 TTCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 171881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236421665600