Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq22 104 2e-17 seq78 84.2 2e-11 >seq22 Length=480975 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || ||||| || | || || ||||| || ||||| ||| | Sbjct 153773 CCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTC 153832 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| ||||| || || || | ||||| |||||||| ||||| | || Sbjct 153833 AACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCAGGAGGA 153892 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| || || |||||||| || | | ||| || | ||| | | |||| Sbjct 153893 ATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATA--GAGTCCGAGGGCTCCA 153950 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | ||||||||||| ||||| ||||| || || || || |||||||||||| Sbjct 153951 CATCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 154000 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||||| |||||| ||||| || || || || || || || ||| Sbjct 154000 GCCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCT 154059 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| |||| || | || || || |||| || | ||| |||||||| | || Sbjct 154060 CAACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGG 154119 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||| ||||| || |||||||| | | | | | ||| | ||| || Sbjct 154120 GATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGAC 154179 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||| || || || || |||||||| || || || ||||||||||| Sbjct 154180 GTCCAATGTGATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 154227 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||| ||| || ||||| ||||| || ||| || || |||||||| ||| | Sbjct 154229 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 154288 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || | || |||| || || || ||||||| |||||||| ||||| | || Sbjct 154289 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 154348 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || || || || || | ||| | | | | ||| | ||| || Sbjct 154349 ATACCTTCCTTATCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCGGACGGTTCGAC 154407 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||| || || || || || || | || || |||||||||||||| Sbjct 154408 GTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCAT 154455 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||| ||| || ||||| ||||| || ||| || || |||||||| ||| | Sbjct 171651 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 171592 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || | || |||| || || || ||||||| |||||||| ||||| | || Sbjct 171591 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 171532 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || || || || || | ||| | | | | ||| | ||| || Sbjct 171531 ATACCTTCCTTATCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCGGACGGTTCGAC 171473 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||| || || || || || || | || || |||||||||||||| Sbjct 171472 GTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCAT 171425 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||||| |||||| ||||| || || || || || || || ||| | Sbjct 171879 CCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTC 171820 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | || || || |||| || | ||| |||||||| | || Sbjct 171819 AACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGG 171760 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| || |||||||| | | | | | ||| | ||| ||| Sbjct 171759 ATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACG 171700 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || |||||||| || || || ||||||||||| Sbjct 171699 TCCAATGTGATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 171653 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || ||||| ||||| || ||| ||||| ||||| ||||| Sbjct 153544 GCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACT 153603 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| || | || |||| || || || ||||||| | ||| || ||||| | || Sbjct 153604 CAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGG 153663 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACT-GTGTCTGCGCTTTCCA 39670 | ||||| ||||| || || || || | ||| | | | | ||| | ||||| Sbjct 153664 AATACCTTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCAATAGAGTCCGAAGGTTCCA 153722 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || || || || || || || || |||||||||||||| Sbjct 153723 CATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 153771 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || ||||| ||||| || ||| ||||| ||||| ||||| Sbjct 172108 GCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACT 172049 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| || | || |||| || || || ||||||| | ||| || ||||| | || Sbjct 172048 CAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGG 171989 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACT-GTGTCTGCGCTTTCCA 39670 | ||||| ||||| || || || || | ||| | | | | ||| | ||||| Sbjct 171988 AATACCTTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCAATAGAGTCCGAAGGTTCCA 171930 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || || || || || || || || |||||||||||||| Sbjct 171929 CATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 171881 >seq78 Length=145407 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 39563 CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 |||| |||||||| || || |||| || | ||| |||||||| | || | ||||| | Sbjct 113054 CATCTTCCAATTGCTTGCCAGCAAAGATCAGACGTTGCTGATCTGGAGGAATTCCTTCCT 113113 Query 39623 TGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCACGTCCAAAGTA 39681 |||| || ||||| || | ||| | | || |||| | ||||||||||| || Sbjct 113114 TGTCCTGGATCTTTTGCTTGA-CGTTGTCAATGCTGTCCGAAGGTTCCACGTCCAGCGTG 113172 Query 39682 ATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || ||||| | |||||| |||||||||||||| Sbjct 113173 ATGGTCTTGCCCGTAAGAGTTTTGACGAAGATCTGCAT 113210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347368414601240