Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 199 4e-46 seq22 107 2e-18 seq78 104 2e-17 >seq2 Length=1145976 Score = 199 bits (220), Expect = 4e-46 Identities = 411/609 (67%), Gaps = 2/609 (0%) Strand=Plus/Minus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||||||||| |||||||| || ||||| || || || | |||||||| || || Sbjct 132297 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 132238 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 || | | || |||||||| || || || || | ||| || |||| | ||| |||| Sbjct 132237 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCG 132178 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 ||||||||| |||||||| ||||| || |||| | || || | | | || | Sbjct 132177 AAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGC 132118 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 | || ||| || ||||| |||||| | | ||||| || || ||||||| Sbjct 132117 GCGAGTCGCACCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCGA 132058 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCG 133186 |||| | ||| || ||||| || | | ||| ||||| || | || Sbjct 132057 TGGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAAGCG 131998 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCT 133246 | |||| ||| ||||| | ||| || |||||||| || || ||||||||||| ||||||| Sbjct 131997 AGTACACTTCGGAGTGAATGTTTTCAATGGCGATCTGGAATCCGTAAAAGCAGCGCGCCT 131938 Query 133247 CGACCACCTGCACTTCTTGAGCGAAACGC-TCGACCAGATTTTCGTTGACGATGCCGTCG 133305 | ||| |||||||| | |||| | ||| | || |||||||| || || || ||| Sbjct 131937 CAGGCACTTGCACTTCACTACTGAAATTCATCG-CAAGGTTTTCGTTCACAATCCCATCG 131879 Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC 133365 ||||| || || || |||| |||||||||||||| ||| ||||||||| ||| Sbjct 131878 CTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCATCTTG 131819 Query 133366 TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 ||||||| | ||| | || |||| || || |||||||||| ||| || Sbjct 131818 ACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTCA 131759 Query 133426 GCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGG 133485 || || |||||||| ||||| |||| | ||| || || || | |||||| || Sbjct 131758 GCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCGATTT 131699 Query 133486 GGGTTTTCG 133494 ||||| ||| Sbjct 131698 GGGTTCTCG 131690 >seq22 Length=480975 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||| | ||||| ||||| || || | || || ||| || | Sbjct 153999 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTCG 153940 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | || ||||||||| || || || || ||||| | || ||| Sbjct 153939 GACTCTATTGACAATGTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCTGATCAA 153880 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| || || ||| |||| || | ||||| | | |||||| ||| Sbjct 153879 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACGTTGAGCGACTATAAC 153820 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| ||||||| || |||||||| ||| || | || || Sbjct 153819 ATCCAAAAGGAGTCGACGCTCCACTTGGTGCTTCGTCTGCGTGGTGG 153773 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | ||||| || |||||||| | |||||||| | || Sbjct 154227 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACCATCACATTGGACGTCGAACCGTCC 154168 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | ||| |||| || | ||||| || || || || | || || Sbjct 154167 GACTCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAG 154108 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | || || || ||||| || || | ||||| | | |||||||||| Sbjct 154107 CAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAAC 154048 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || ||||| |||| |||| ||||| ||||| || | || ||| Sbjct 154047 ATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGGC 154000 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | ||||| || |||||||| | |||||||| | || Sbjct 171653 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACCATCACATTGGACGTCGAACCGTCC 171712 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | ||| |||| || | ||||| || || || || | || || Sbjct 171713 GACTCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAG 171772 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | || || || ||||| || || | ||||| | | |||||||||| Sbjct 171773 CAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAAC 171832 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| |||| |||| ||||| ||||| || | || || Sbjct 171833 ATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGG 171879 >seq78 Length=145407 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| || |||||||| |||||||| | ||||| || | Sbjct 113213 AAGATGCAGATCTTCGTCAAAACTCTTACGGGCAAGACCATCACGCTGGACGTGGAACCT 113154 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||||| | | |||| | || |||| |||| ||||| || |||||||| | || Sbjct 113153 TCGGACAGCATTGACAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTCCAGA 113095 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || || || || || | || ||||| || |||| || | ||||| || ||||| Sbjct 113094 TCAGCAACGTCTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACGCTTTCGGACTA 113035 Query 38420 CAACATCCAAAAGG 38433 |||||||||||||| Sbjct 113034 CAACATCCAAAAGG 113021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171049395200