Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq22 120 1e-21 seq4 120 1e-21 seq15 104 9e-17 seq78 91.5 6e-13 seq11 87.8 7e-12 >seq22 Length=480975 Score = 120 bits (132), Expect = 1e-21 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||| || ||||| |||||| | ||||| || | || Sbjct 153999 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTCG 153940 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||||| | | || |||||||| |||||||||||||| ||||||||||||||| Sbjct 153939 GACTCTATTGACAATGTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCTGATCAA 153880 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| |||||| | || || || | |||||||| | || ||| || ||||| Sbjct 153879 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACGTTGAGCGACTATAAC 153820 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || ||||| || Sbjct 153819 ATCCAAAAGGAGTCGACGCTCCACTTGGT 153791 Score = 109 bits (120), Expect = 2e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || ||||| || || || || || || | || || ||| | || Sbjct 154456 AATGCAGATCTTCGTGAAGACACTCACCGGCAAGACCATCACGTTGGACGTCGAACCGTC 154397 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || || || | || || || ||||| ||||||||||| |||||||||||||| Sbjct 154396 CGACTCGATCGACAACGTGAAGCAGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCA 154337 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| ||||| ||||| | || || || || ||||| || | |||||| || ||||| Sbjct 154336 ACAGCGTTTGATTTTTGCTGGAAAGCAGCTGGAAGACGGTCGTACTTTGAGCGACTATAA 154277 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 |||| | ||||| | ||| | ||||| || Sbjct 154276 TATTCAGAAGGAATCGACATTGCACTTGGT 154247 Score = 109 bits (120), Expect = 2e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || ||||| || || || || || || | || || ||| | || Sbjct 171424 AATGCAGATCTTCGTGAAGACACTCACCGGCAAGACCATCACGTTGGACGTCGAACCGTC 171483 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || || || | || || || ||||| ||||||||||| |||||||||||||| Sbjct 171484 CGACTCGATCGACAACGTGAAGCAGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCA 171543 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| ||||| ||||| | || || || || ||||| || | |||||| || ||||| Sbjct 171544 ACAGCGTTTGATTTTTGCTGGAAAGCAGCTGGAAGACGGTCGTACTTTGAGCGACTATAA 171603 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 |||| | ||||| | ||| | ||||| || Sbjct 171604 TATTCAGAAGGAATCGACATTGCACTTGGT 171633 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| || || || ||| | ||||| ||| | || Sbjct 153771 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 153712 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||||| | || || || || || || |||||||| |||||||| |||||| Sbjct 153711 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 153652 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | ||||| | || || || || ||||| || | |||||| ||||| ||| Sbjct 153651 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 153592 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | ||| | ||||| || Sbjct 153591 ATTCAAAAGGAATCGACATTGCACTTGGT 153563 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| || || || ||| | ||||| ||| | || Sbjct 171881 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 171940 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||||| | || || || || || || |||||||| |||||||| |||||| Sbjct 171941 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 172000 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | ||||| | || || || || ||||| || | |||||| ||||| ||| Sbjct 172001 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 172060 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | ||| | ||||| || Sbjct 172061 ATTCAAAAGGAATCGACATTGCACTTGGT 172089 >seq4 Length=1007552 Score = 120 bits (132), Expect = 1e-21 Identities = 339/516 (66%), Gaps = 5/516 (1%) Strand=Plus/Plus Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148 |||| || | | ||||| || ||||| |||||||||| || | || | | || | Sbjct 587730 AAAAGACGTTGTTTGATGTCAAGCGTTTGATTGGCCGTAGCTACAACGACAAGTCGGTGC 587789 Query 451149 AAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTC 451208 || || || ||||| | | || || | || || | | || ||||| | ||| | Sbjct 587790 AAGCCGATAAGAAATTGCTGCCGTACGAAATTGTCAACAAGGATGGCAAGCCGTTTATCC 587849 Query 451209 AAGTAAATTATAAAGG-TGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 | || | || |||| ||| | || || || | ||||||||||| || | ||||| Sbjct 587850 AGGTGG-TGATCAAGGGTGAGAAGAAGACGTTCTCGCCTGAAGAAATATCGGCCATGGTG 587908 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 | || || ||||| | | |||||| || |||||| | ||| |||||| || Sbjct 587909 TTGACGAAGATGAAGCACATCGCAGAAGGCTACATTGGTCGTGAAGTGTTTGATGCTGTT 587968 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 | || || || ||||| || |||||||| || || ||||| || || ||||| || Sbjct 587969 GTGACGGTGCCTGCTTACTTTAATGATGCTCAGCGTCAAGCTACCAAGGATGCTGGTACC 588028 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 ||||| ||||| | || | || || || || ||||| || || ||||| | || || Sbjct 588029 ATTGCCGGTTTGACCGTGCAACGTATCATCAACGAACCGACTGCTGCTGCGATTGCCTAC 588088 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 || | || || || | | | || || || || | | || |||||| |||| || Sbjct 588089 GGTAT-CGACAAGCAGACGCA--AGGCGAGAAGAACGTGCTTGTGTTTGATCTTGGCGGT 588145 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACC 451567 || ||| ||| | | | || | ||||| | || || |||||||| ||| || Sbjct 588146 GGTACTTTCGATGTTACACTGCTCGCTATTGATGGCGGTGTGTTTGAAGTGTTGGCCACG 588205 Query 451568 AATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 || ||||||||||| | || ||||||||| | ||| Sbjct 588206 AACGGTGATACTCACTTGGGTGGTGAAGATTTCGAT 588241 >seq15 Length=624531 Score = 104 bits (114), Expect = 9e-17 Identities = 265/399 (66%), Gaps = 12/399 (3%) Strand=Plus/Plus Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 |||| |||||||||||| ||||| || | || |||||||| || || ||||| || Sbjct 429017 GTAAGCTATAAAGGTGAAGAAAAAACGTTCACGCCGGAAGAAATCTCGTCAATGGTGCTA 429076 Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 || || ||| || | || || ||||| || | |||| | || || || Sbjct 429077 ACCAAGATGCGTGAGATCGCCGAGGCCTATATCGGCAAGCAGGTTAAGAACGCTGTGATC 429136 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || || || || ||||| ||||| | || || ||||| ||||| ||||| || || Sbjct 429137 ACCGTGCCGGCGTATTTTAATGACTCGCAGCGACAAGCCACTAAGGATGCTGGGGTCATC 429196 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 ||||| || ||||| | || || || || || || || ||||| || | || |||||| Sbjct 429197 GCTGGCTTGAATGTGTTGCGTATGATCAACGAGCCGACCGCAGCAGCGATCGCGTATGGA 429256 Query 451451 CTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGA 451510 | ||| ||| | || | ||| | || | || | ||||| || || || || Sbjct 429257 -TTGGA----CAAGA-AAGGTGGTGAACACAACGTCTTGATCTTTGACTTGGGAGGTGGT 429310 Query 451511 ACTCATGATACTTCTGTACTTT---CAATTGAAGATGGGGTATTTGAAGTAAAGGCAACC 451567 ||| |||| || ||||| |||| ||||| || ||||||| || || || || Sbjct 429311 ACTTTTGATGTGTC---ACTTTTGACAATCGAAGAGGGCATATTTGAGGTCAAAGCCACT 429367 Query 451568 AATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 || ||||| ||| | || |||||||| |||| ||| Sbjct 429368 GCGGGCGATACCCATTTGGGTGGTGAAGACTTTGACAAT 429406 Score = 93.3 bits (102), Expect = 2e-13 Identities = 383/597 (64%), Gaps = 13/597 (2%) Strand=Plus/Plus Query 451904 GTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTTATTTT 451963 ||||| || || || || || || || || |||||||| || || |||| | ||| Sbjct 429704 GTGCTGGTCGGTGGGTCGACTCGGATCCCAAAAATTCAGCATCTGCTGTCGGATCTTTTC 429763 Query 451964 GGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCA 452023 || ||| |||| | ||| | || || |||||||| || || | ||| || | Sbjct 429764 AATGGTAAAGAACTCTACAAGTCGATCAACCCCGATGAAGCAGTCGCGTTTGGCGCGACC 429823 Query 452024 GTTCAAGCAGCTATTCTAACAGGTTCAGATGA----TGAAAAATTAGGAGATATTCTGTT 452079 || ||||| || || || | ||||| || | | || | | ||| | ||||| Sbjct 429824 GTACAAGCCGCAATCCTCAGTGGTTCCGACAAATCGTCCAAGCTCCAG-GATTTGCTGTT 429882 Query 452080 AGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTT 452139 | ||||| |||| || || | ||| | |||||||| ||||| ||||||| | | Sbjct 429883 GCTGGATGTCGCACCACTTTCATTGGGACTGGAAACAGCGGGTGGCGTGATGACGACACT 429942 Query 452140 AATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTG- 452198 || ||| || | | || || |||| || || ||| || | | | | Sbjct 429943 GATCCCACGCAACACAACAGTCCCAACGAAGAAGACGCAGACGTTTTCGAC-GTATGCGG 430001 Query 452199 ATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATA 452258 | || ||||| || || ||||||||||||||||| || || ||||||||||| |||| Sbjct 430002 ACAAACAACCGGGCGTGCTCATTCAAGTGTTTGAAGGGGAGCGCGCAATGACACGGGATA 430061 Query 452259 ATAATAAACTAGGAGAATTTACTCTTTCAAAC---ATTCCTCCTATGCCAAGGGGAACTC 452315 | || || || |||| | ||| | || || || || |||||| | || | Sbjct 430062 ACCATTCGCTGGGCAAATTCA-ACTT--AGACGGAATCCCGCCGATGCCACGTGGTGTGC 430118 Query 452316 CTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTG 452375 | || || || | || | ||| |||| || ||||| || | |||||| || || | Sbjct 430119 CACAGATCGATGTGACATTTGACATTGACGCGAATGGGATCTTGAATGTGTCGGCGGTCG 430178 Query 452376 AAAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATCTA 452435 | ||||| | || ||| | | || || |||||||| || || ||| || | || Sbjct 430179 AGAAATCGACGGGCAAAGAAAACAAGATCACAATTACGAACGACAAAGGTCGACTTTCCC 430238 Query 452436 AAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGAAC 452492 | ||||| ||||| ||| | | || || || || | |||||||| || |||| Sbjct 430239 AGGAAGAGATTGATCGCATGATCGCCGACGCCGAGAAGTACAAGGATGCCGACGAAC 430295 >seq78 Length=145407 Score = 91.5 bits (100), Expect = 6e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || || || || || || || || || || ||| | || Sbjct 113210 ATGCAGATCTTCGTCAAAACTCTTACGGGCAAGACCATCACGCTGGACGTGGAACCTTCG 113151 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || ||||| || || || ||||||||||||||||| ||||| Sbjct 113150 GACAGCATTGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 113091 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 |||||| | || || | || || ||| | |||||||| Sbjct 113090 CAACGTCTGATCTTTGCTGGCAAGCAATTGGAAGATGG 113053 >seq11 Length=740280 Score = 87.8 bits (96), Expect = 7e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 364653 AAAGTAGCTCAATTAGCAGGTTTTGTATCTGACCGGGTAGCTTATCATCACGGTGAGGCA 364712 || ||||||||||| || || | || || || | |||||||||||||||||| | Sbjct 453287 AAGGTAGCTCAATTGGCTGGCTACGTGTCGGAACACTCTGCTTATCATCACGGTGAGCAA 453228 Query 364713 AG-TTTAATGGGAGCAATAATTGGAATGGCACAAAATTTTGTTGGAAGTAATAATGTAAA 364771 || || || |||| |||| || ||||| ||| ||||||| || || || ||| | | Sbjct 453227 AGCTTGAACGGGA-CAATTATCAACATGGCGCAAGATTTTGTCGGCAGCAACAATATTCA 453169 Query 364772 TTTACTAGAACCAAAAGGACAATTTGGAAGTCGAGTAATGGGAGGTAAAGATTCTGCCAG 364831 | | || ||||| || ||||| || | || | ||||| || ||||| |||| || Sbjct 453168 TCTTCTCTCTCCAAACGGCCAATTCGGTACCAGATTGATGGGTGGAAAAGACGCTGCAAG 453109 Query 364832 CCCACGTTATATTTGGACCAAACTTGA 364858 || ||||| || | || ||||| || Sbjct 453108 TCCTCGTTACATCTTCACAAAACTGGA 453082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975711312110240