Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq15 244 8e-59 seq4 98.7 8e-15 seq3 87.8 1e-11 >seq15 Length=624531 Score = 244 bits (270), Expect = 8e-59 Identities = 944/1460 (65%), Gaps = 45/1460 (3%) Strand=Plus/Plus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 || || || ||| | |||| ||| || | ||||| |||||||| | ||||| ||||| Sbjct 417705 GTCGACTTTTCAACCGCAGACACGTTCAAGATACCGTTGGCATCAATGTCAAAGGTGACA 417764 Query 517304 TCAATTTGAGGGACCCCTCTCTGAG-CA--GGTGGGATCCCTTCCAAATTAAATGTTCCC 517360 || || || || || || | ||| || |||||||| || ||||| || || | ||| Sbjct 417765 TCGATCTGTGGCACACCAC---GAGGCATCGGTGGGATGCCATCCAAGTTGAACTTGCCC 417821 Query 517361 AGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACA 517420 | || || || || | |||||||| || || | || || || || Sbjct 417822 AACAAGTTGTTGTCGCGGGTCATCGAACGTTCACCTTCAAAGACCTGAATCAACACACCA 417881 Query 517421 GTTTGATTATCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTT 517479 | || || || | || || | || | |||| || || || ||| | || ||||| Sbjct 417882 GGCTGGTTGTCGGCGTAGGTCGAGAA-AGTCTGCGACTTCTTGGTAGGCACAGTCGTGTT 417940 Query 517480 TCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGT 517539 | | || | | ||||||||| |||||| || ||||| |||||||| || | || || Sbjct 417941 ACGGGCGATCAAAGTGGTCATAACACCACCGGCGGTTTCCAAACCAAGCGACAATGGGGT 418000 Query 517540 GACATCAACTAGGACAATATTTTGAAGTTTTTCA--TCAGTT-TGACCAACAAGAATAGC 517596 ||||||| | | | || ||||| |||||| | || | ||| | ||| || Sbjct 418001 CACATCAAGCAACAACAGATCCTGAAGCTTTTCAGATTGGTCGTTACCGCTCAAAATGGC 418060 Query 517597 TGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAG--TTTCATTTAGT 517654 || || | || |||||| | |||||||||||||| || |||| | || || | Sbjct 418061 AGCCTGGACAGTAGCACCGAAGGCAACAGCTTCATCGGGGTTAATCGACTTGCAAG--GC 418118 Query 517655 TTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCT 517714 | || || ||||| || | ||||| | ||| ||||| || ||||| | ||||| Sbjct 418119 TCCTTGCCGTTGAAGAATTCCGAAAGCAATTGCTGCACCTTGGGGATACGGGTGGATCCA 418178 Query 517715 CCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTT 517774 || || | |||| ||| ||||| || || || || || || | || ||| Sbjct 418179 CCGACAAGCACAACTTCGTGCACTTGGCTCTTCGAAAGCTTCGAGTCACGAAGCACCTTT 418238 Query 517775 TCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTA 517834 || || ||||| | | | || ||||| | || | ||||||||| ||| | Sbjct 418239 TCGACAGGTTCCATGGTCTTGCGGAAGAAGTCGAAGCACATTTCTTCGAAACGAGCACGG 418298 Query 517835 GTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTT-TG 517893 || | || || | |||| || ||||| | || |||| ||| || |||| || Sbjct 418299 GTGATGGTCGAGTTGAAGTCAACACCATCGAAAAGCGAGTCAATTTCGAT-GTAGGCCTG 418357 Query 517894 AGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC 517953 | ||| || || || | ||| |||||||||||||| || || | || | || | || Sbjct 418358 GGCCGACGACGAAAGCGTACGCTTAGCACGTTCACAGGCAGTACGCAGACGGCGGA--GC 418415 Query 517954 TTTTGCTGATTGATTCAA----ATCTGTTTTATAT--TTTCTCTTGAAATCTTCAACACA 518007 || ||| ||| | || | || | || | |||||| || | || | Sbjct 418416 ----GCACGTTGGTTCGACGTGATGTCCTTGCGGTGCTTGCGCTTGAATTCCGCGACGAA 418471 Query 518008 CCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTA 518065 || | |||||||| ||||||||||||||||| ||||| | ||| | || | || Sbjct 418472 G--TGGTCGACAAGACGGTTATCAAAATCTTCACCACCCAAGTGAGTGTCACCAGCAGTG 418529 Query 518066 GCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCA 518125 || | |||| ||||| || ||||||| ||| || | ||||| || || ||| Sbjct 418530 GCCTTCACTTCGAAAATACCTTCTTCAATGCTCAAGAGCGACACATCGAAAGTACCGCCA 418589 Query 518126 CCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCA 518185 || | ||| || || || || || ||| | | || || || | ||| || ||| Sbjct 418590 CCAAGATCGAAGATGAGCACGTTGCGTTC---GCCACCCTTCTTGTCCAAACCGTAGGCA 418646 Query 518186 AAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCT 518245 | ||| |||||||||||||| ||||| || | | || || | ||||||||| || Sbjct 418647 ATAGCGGCAGCAGTTGGTTCGTTAATGATACGGAGCACGTTCATACCAGCAATGGCACCG 418706 Query 518246 GCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA 518305 ||||| || ||||| || | ||| |||||||| ||||| || || || ||||| || ||| Sbjct 418707 GCATCCTTGGTGGCCTGACGTTGCGAATCGTTGAAATAGGCCGGGACGGTAATGACTGCA 418766 Query 518306 TCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATT 518365 | | || || |||||||| |||| || || ||||| || | | | ||| Sbjct 418767 TTCTTGACCTCCTTACCAATGAAAGCTTCAGCGACTTCCTTCATCTTGATGAGGACCATC 418826 Query 518366 GATGAAATTTGTTCTGG--GGAATATTGCTTGGATTCA-TTTTGATATGATACTTCAAAA 518422 || || |||| |||||| |||| | ||| |||| |||| | | || | Sbjct 418827 GACGAGATTTCTTCTGGTTGGAACGT--CTTCTCTTCACCCTTGA-AGGTGACCGTGATT 418883 Query 518423 TATGGTTTATTACCA---ACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGA 518479 | ||| || | ||| || | || || |||||||||| || ||||| | || Sbjct 418884 TGTGGCTTGTCGCCAGCGCCAGGGGTGACCTTGAATGGCCAGTGCTTGATATCAGCCTGG 418943 Query 518480 ACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTT 518539 || || ||||| | || | | ||| || || || || |||||||| | || ||| Sbjct 418944 ACGATTGGGTCACTGAATTTGCGACCGATCAAACGCTTGGCATCAAAGACCGTGTTGTGC 419003 Query 518540 GGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAAT 518599 | ||| || || |||| | ||||| ||||| || || ||| |||| || || || || Sbjct 419004 GCATTCATGGCGACTTGGTTCTTGGCGGCATCACCGATGAGACGTTCGGTATCGGTGAAA 419063 Query 518600 GAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCA 518659 | || || ||||| || || || |||||||| || || || || ||||| || | Sbjct 419064 GCGACGTACGATGGGGTCGTACGGTTACCTTGGTCGTTGGCGATGATTTCCACACGGTCG 419123 Query 518660 TTTTGCCATACACCTACACA 518679 |||||||| ||||| || || Sbjct 419124 TTTTGCCACACACCGACGCA 419143 Score = 138 bits (152), Expect = 9e-27 Identities = 572/890 (64%), Gaps = 18/890 (2%) Strand=Plus/Minus Query 517799 AACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATT 517858 ||||| || | ||| | || || ||| || | |||| ||| ||| | |||||| Sbjct 429630 AACAAATCAGCACATAAATCCTCAAATCGTGCACGCGTAATAGTTGAGTTAAAGTCAATT 429571 Query 517859 CCTTCGAACAAAGAATCAACTTCAATCGTA-GTTTGAGTCGAAGAAGATAGTGCACGTTT 517917 |||||| ||||||| |||| |||||| ||| | || | ||| || | || || || Sbjct 429570 CCTTCGTACAAAGAGTCAATTTCAAT-GTATGCCTGGGCCGATGAGCTCACTGTGCGCTT 429512 Query 517918 AGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTT-TTGCTGATT-GATTCAAATCT 517975 ||||| ||||| | || | ||| | ||||| | | ||| | | || |||||| Sbjct 429511 GGCACGCTCACAAGAAGTTCGTAGCCGACGTAACGATCGTTGAGCAGTCGA--CAAATCC 429454 Query 517976 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCT 518035 |||| || || | ||| || || | | | || || ||||| ||||| ||| Sbjct 429453 TTTTTGTACTTGCGCTTAAACTCGCTGGCGAAATACTCGACGAGTCGATTGTCAAAGTCT 429394 Query 518036 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGA 518095 ||||| ||||| | |||| || | || ||| | || | || | || ||||| | Sbjct 429393 TCACCACCCAAATGGGTATCGCCCGCAGTGGCTTTGACCTCAAATATGCCCTCTTCGATT 429334 Query 518096 GACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 518155 | |||||| | |||||| || ||||| |||| ||||| || | || || ||| Sbjct 429333 GTCAAAAGTGACACATCAAAAGTACCACCTCCCAAGTCAAAGATCAAGACGTTGTGTTCA 429274 Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 ||| | || || | |||||||| | || || || || || || || || || Sbjct 429273 CCACCTT---TCTTGTCCAATCCATACGCGATCGCTGCTGCGGTCGGCTCGTTGATCATA 429217 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 | ||| ||||| | ||||| || || ||||| ||||||||||||| || || || Sbjct 429216 CGCAACACATTCAAGCCAGCGATGACCCCAGCATCCTTAGTGGCTTGTCGCTGCGAGTCA 429157 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT 518335 |||||||| || || || || || || || | | || | || || ||||| || || Sbjct 429156 TTAAAATACGCCGGCACGGTGATCACAGCGTTCTTAACCTGCTTGCCGATATAGGC-CTC 429098 Query 518336 GCCG-TTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GGGAATATTGC 518392 | || | | ||| || ||| | |||||| || |||| ||| | | ||| || Sbjct 429097 GGCGATCTCACGCATCTTGGTTAGCACCATTGACGAGATTTCTTCCGGCGTGAACGTT-- 429040 Query 518393 TTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC---AACATTAATAACT 518449 || |||| || ||| ||| | | ||| || | || | | | || Sbjct 429039 TTTTCTTCACCTTTATAGCTTACAACGATTAGTGGCTTGTCGCCAGGACCGCCGGTGACC 428980 Query 518450 TTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATT 518509 || |||| ||| | | ||||| ||||| || | |||| |||| | | ||||| Sbjct 428979 TTGAATGACCAATGTCGAATATCCGATTGTACTTCTGGGTCGCTAAATTTGCGGCCAATA 428920 Query 518510 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCA 518569 | ||| || || ||||| | || ||| | || || || | |||| || || ||| Sbjct 428919 AGTCGCTTGGCGTCAAAGACCGTGTTGTGCGCGTTCATGGCGACCTGATTCTTAGCCGCA 428860 Query 518570 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629 || ||||||| | |||| || ||||||| || || || ||||| ||||| || || Sbjct 428859 TCACCAATCAATCGCTCTGAGTCGGTAAATGCCACGTAAGAGGGAGTAGTGCGGTTGCCC 428800 Query 518630 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 |||||||| || || || || || | | |||||| ||||| || || Sbjct 428799 TGATCATTGGCGATGATCTCGACGCGGTCGTGTTGCCACACACCAACGCA 428750 >seq4 Length=1007552 Score = 98.7 bits (108), Expect = 8e-15 Identities = 245/369 (66%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079 ||| | ||| ||||||||||| ||||| | ||||| || ||| || |||| || Sbjct 588247 ACGCTGATCGAAATCTTCACCACCCAAGTGAGTATCACCGTTCGTGGCCAACACTTCAAA 588188 Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139 | || | |||| || | || || ||||| || ||||| || | |||||| | Sbjct 588187 CACACCGCCATCAATAGCGAGCAGTGTAACATCGAAAGTACCACCGCCAAGATCAAACAC 588128 Query 518140 AAGTACATTCATTTCTTTGTCTTG-GTTT--TTATCAAGACCATACGCAAAAGCAGCAGC 518196 ||| || ||| | || | |||| || | || || | ||| || |||| |||||||| Sbjct 588127 AAGCACGTTCTTCTC---GCCTTGCGTCTGCTTGTCGATACCGTAGGCAATCGCAGCAGC 588071 Query 518197 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 518256 ||| ||||| || || || | || | | ||| ||||| | || ||||| || || Sbjct 588070 AGTCGGTTCGTTGATGATACGTTGCACGGTCAAACCGGCAATGGTACCAGCATCCTTGGT 588011 Query 518257 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTC 518316 ||||| | || | ||| ||||| || ||||| || || | ||| |||||| ||||| Sbjct 588010 AGCTTGACGCTGAGCATCATTAAAGTAAGCAGGCACCGTCACAACAGCATCAAACACTTC 587951 Query 518317 TTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTG 518376 |||||| || | ||| | || ||||| || | || | ||| | || |||| Sbjct 587950 ACGACCAATGTAGCCTTCTGCGATGTGCTTCATCTTCGTCAACACCATGGCCGATATTTC 587891 Query 518377 TTCTGGGGA 518385 ||| || || Sbjct 587890 TTCAGGCGA 587882 >seq3 Length=1043435 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 ||||||||||| |||||| | || || ||||||| || ||||| ||| | || || ||| Sbjct 290462 GGTAAAGAAGGCCGTATTCGTGGCAACCTGATGGGCAAGCGTGTGGATTTTTCAGCTCGT 290403 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTATT 668974 ||||| |||||| | ||||| || |||| | || ||||||| || || | ||| Sbjct 290402 ACAGTCATTACTGCAGATCCAAACATTGAAATTGATCAAGTTGGCGTCCCGCGATCCATT 290343 Query 668975 GCTAAAAATCTTACTTTT 668992 |||| ||||| ||| || Sbjct 290342 GCTATGAATCTGACTGTT 290325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780808505477680