Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq17 203 4e-47 seq2 116 5e-21 seq3 96.9 4e-15 >seq17 Length=584494 Score = 203 bits (224), Expect = 4e-47 Identities = 1042/1631 (64%), Gaps = 48/1631 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| | ||| ||||||| ||||| | || |||||| |||||||| | || Sbjct 104686 CCGCAGCAAATGATCATGCGTGTCGCTGTAGGCATCCATAAAGAAGATATCAAGCTGGTG 104627 Query 111672 TTGGAGACATACGACAAGATGTCCCG-TGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| || || | ||||| | | || | |||| ||||| |||||||| || || Sbjct 104626 CTTGAGACGTATGAGTACATGTCGCTCTCGT-TCTTCACGCACGCCACACCAACACTGTT 104568 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTG--CAAACAAGGAG 111788 ||||| ||||||||| | || ||| |||| |||||| |||||| || |||| | Sbjct 104567 TAACGCAGGTACACCACGGCCACAACTGTCTTCGTGTTTC-TTATTGGCCATGCAAG-AC 104510 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 ||||| || | |||||||||| |||||||| |||| || ||||| |||||||| Sbjct 104509 GATTCTATTGAGGGCATTTACGACACTCTCAAGCAATGCGCATGCATCTCCAAGTGGGCA 104450 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908 || |||||||| || ||| || | | | || | || || | |||||| Sbjct 104449 GGGGGTATCGGCATCAGCATGCACAACATTCGCGCGACGAATAGCTACATCCGTGGTACA 104390 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 ||||| || | |||||| | || ||| | || || || || | ||| || || || Sbjct 104389 AATGGCACGTCCAACGGTATTGTGCCTATGTTGCGTGTGTTCAATGACACTGCTCGTTAC 104330 Query 111969 GTAAACCAAGCTG--GGC-GTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 || | |||| || ||| |||||||| || | ||| ||||| | ||||| ||||| Sbjct 104329 GTTGATCAAGGTGGTGGCAAGCGCAAGGGGTCGTTTGCAATCTATTTGGAGCCGTGGCAT 104270 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || || | | |||||||| || ||| | || || ||| |||| | |||| Sbjct 104269 GCCGACGTATTTGAGTTCCTGGATTTGAGGAAGAATCACGGTAATGA-ACTTCATCGTGC 104211 Query 112086 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 || ||||| || | ||| | ||||| |||||| | ||||||||| | || || | | Sbjct 104210 ACGTGATCTGTTTTACGCCATGTGGATCCCAGATTTGTTCATGAAGCGTGTGGAAGCCAA 104151 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTG 112203 ||| | ||| ||| || || || | | || | ||||| | ||| ||| | ||||| Sbjct 104150 CGGCGAGTGGAGTCTTTTCTGCCCTAATGAAGCGACTGGTCTGTTCGACTGCTG-GGGTG 104092 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGT 112261 | || || || ||| | ||||| |||||||| | | | ||| | || ||| | Sbjct 104091 ATGAATTCGAGGCCTTGTACACCAAGTACGAAGCCCAGGGCTTGGC--CCGCAAGACCAT 104034 Query 112262 GCCAGCTGC--CGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 | || || | || ||||| || ||| | | |||| | ||| || || ||||| Sbjct 104033 -CAAGGCGCAACAAT-TGTGGTTCGCCATTTTGGACGCTCAGATCGAAACCGGCACACCC 103976 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGG---TGTG 112376 || ||||| ||||| || || || || | ||| ||||| | || ||||| | | Sbjct 103975 TACATGCTCTACAAGGATGCATGCAATCGCAAGTCGAATCAGCAAAACTTGGGCACTATT 103916 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436 | ||| ||| | || || || | || | ||| ||| || || || Sbjct 103915 CGCTCCAGT---AACTTGTGCTGTGAGGTCGTCGAGTACACATCCAAGGACGAAGTCGCG 103859 Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACAT 112494 ||||| ||| | || || || || || |||| | ||| ||||| | | Sbjct 103858 GTGTGCAACTTGGCGTCCATTGCACTGTCCAAATTTGT--------CGACAATGGTGTGT 103807 Query 112495 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTA 112554 || | | | | || ||| ||||| | ||||| | ||| || | ||| || |||| || | Sbjct 103806 TTAACTTTCAGAAGCTCTACGAAATCACGAAGATTGTGACCAGAAATCTGAACAAGGTCA 103747 Query 112555 TTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 112613 |||||| || | || || | ||| || ||||||| | |||| || || Sbjct 103746 TTGATATCAACTACTATCCGATCCCAGA-AGCCAAGCGATCTAATCTACGACATCGCCCT 103688 Query 112614 ATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGAT 112673 | ||| | ||||| ||||| | || |||| || ||||| | | | || || Sbjct 103687 GTGGGTATTGGTGTGCAAGGGTTGGCTGATGCGTTTATTCTCATGGGGTTCCCCTTCGAA 103628 Query 112674 TCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTT 112733 || ||||| ||| | || || || ||||| || |||| | | || | Sbjct 103627 AGTGAGCAAGCGCGAGAATTGAACAAGCACATTTTTGAAACGCTGTACTATGGAGCCATG 103568 Query 112734 GAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 112793 || || | ||| | ||| ||| |||| || |||||||| | ||||| || || Sbjct 103567 GAAGCATCTATGGAACTTGCAAAGGAGTATGGCCCGTATGAAACTTACGAGGGCTCCCCT 103508 Query 112794 GCTTCACAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACCAAGCT----TCACT 112848 | | |||||| ||| || ||||||||||||| || | |||| | || || Sbjct 103507 G-TGAGCAAGGGCATCTTCCAGTTTGATATGTGGG-GTGTCACTCCAACATCTGGTCTCT 103450 Query 112849 ACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 112908 || |||| || | || | | || | | ||| | || ||| || ||| Sbjct 103449 GGGATTGGGCTGCATTGAAAGCTCAAGTCGCTAAACATGGTGTGCGCAACTCCCTGTTGT 103390 Query 112909 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 112968 |||| || |||||||| || || || || || |||||||| |||||||||| | |||| | Sbjct 103389 TGGCGCCCATGCCAACGGCGTCGACTGCTCAGATCTTGGGCAATAATGAATCCATTGAGC 103330 Query 112969 CCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACA 113028 | | |||| | ||||| || | | ||||| || || ||| ||| ||||||| Sbjct 103329 CATTCACGTCCAACATGTACAACCGTCGCGTGCTCGCTGGTGAATTTACGATCGTCAACA 103270 Query 113029 AGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCA 113088 || | ||| || | || |||| || ||||| ||||| | || || | | | Sbjct 103269 AGTACCTCATGAAGGAGCTCATCGAACTTGGTATCTGGACACCTGAGGTGCGCAACCAAA 103210 Query 113089 TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTG-GATATTCCAGATGAAATTAAGAAG 113147 | || | | ||||| || | ||||| | || | ||||| |||| ||| ||| | Sbjct 103209 TCTTGCATGACGGTGGCTCGGTGCAAAA-AGTGCGCTCGATTCCTGATGCAATCAAGGAA 103151 Query 113148 TTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGT 113207 |||| ||||| |||||||||||| |||| || | || |||| || |||||| Sbjct 103150 AAGTACAAAACAGTGTGGGAAATCAAGCAAAAGGTCGTGTTAGATTTGGCAGCTGATCGT 103091 Query 113208 GGTCGCTTCAT 113218 ||| || ||| Sbjct 103090 GGTGCCTACAT 103080 >seq2 Length=1145976 Score = 116 bits (128), Expect = 5e-21 Identities = 169/238 (71%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 102158 |||||| |||| | ||||| | ||||| || |||||| ||||||||| || Sbjct 132054 GCCATCGAAACCATCCCATGCGTGACCAAGAAGGCCAGTTGGGCATTGAAGTGGTGCGAC 132113 Query 102159 ACAAAGTCGCGTT----CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTAT 102214 | |||| | ||| |||||| || | || ||||||||| ||| ||||| || Sbjct 132114 TCG----CGCGCTGCTGCCTATGCTGAACGGATTTTGGCATTTGCGGCTGTCGAGGGAAT 132169 Query 102215 CTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGG 102274 |||||| || |||||||||||| | || | ||| | |||||||| || |||||||| || Sbjct 132170 CTTCTTTTCGGGTTCCTTCTGCTCCATCTTCTGGTTGAAGAAGCGTGGGCTCATGCCTGG 132229 Query 102275 TCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 |||| | ||||| || || || ||| |||||| || || | ||| || |||||| Sbjct 132230 TCTCAGTTTCTCGAATGAACTCATCAGTCGTGATGAAGGGTTGCACTGTGACTTTGCG 132287 >seq3 Length=1043435 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 176018 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCT-CAAGAAGATTGAT 176076 |||||||| |||||| | ||| || || || |||||| | || | ||| || | | Sbjct 493323 GCATCCTTGCCACCCTGTAAACGTGTCCCGAATTGACCAGATGGGTACAATAAAGGTAA- 493265 Query 176077 ATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCG-TGTCCGCGAGAGAGACTT 176135 |||||| | ||| | |||||| | ||||| |||||||||| || || || || ||| Sbjct 493264 ATTGTTGGCACCAACGTAGTCTTGCGCCATATTGACAATCGTTGAATGC-AGCGACGCTT 493206 Query 176136 CACCGTGGTGGTACGCACTCTTCTCTGCGACA-AATGCCGCCAACTGCGCCACTTTCATC 176194 | |||||||| ||||| | | ||| | ||| | |||| |||||||| || || | | Sbjct 493205 CGCCGTGGTGATACGCTGTGTGCTC-ACTACAGTACCCCGCTAACTGCGCTACCTTGACC 493147 Query 176195 TCATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGA 176254 || | | |||| || | | ||||||| ||| ||| || || |||||| |||||| Sbjct 493146 TCTTTCGTGAGCTTGCGCTTTAGACATGCGAACAAAACTTTTCGCTGCGAAACTTTGAGA 493087 Query 176255 CCATC 176259 ||||| Sbjct 493086 CCATC 493082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740227401600